goa_reasoning / README.md
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## Dataset Description
This dataset integrates **Gene Ontology (GO)** annotations (filtered to experimental evidence, IDA) with bibliographic data from **Europe PMC**.
Each record links a biological entity (gene/protein) to a GO term and the supporting scientific publication (Title and Abstract).
### **Columns**
- **DB**, **DB_Object_ID**, **DB_Object_Symbol** — Source database and gene/protein identifiers
- **Qualifier** — Relationship qualifier (e.g., `NOT`, `contributes_to`)
- **GO_ID**, **GO_Name** — GO term and its descriptive name
- **DB_Reference** — Supporting reference (PubMed or other)
- **Evidence_Code** — Experimental evidence type (e.g., `IDA`)
- **Aspect** — Ontology branch (`P` = process, `F` = function, `C` = component)
- **DB_Object_Name**, **DB_Object_Synonym**, **DB_Object_Type** — Entity metadata
- **Taxon** — Organism taxonomy ID
- **Date**, **Assigned_By**, **Annotation_Extension** — Annotation metadata
- **PMID** — PubMed ID for the supporting publication
- **Title**, **Abstract** — Publication title and abstract text (fetched from Europe PMC)
### **Summary**
This dataset forms a structured link between curated **GO annotations** and **natural language descriptions** of the underlying biology — suitable for:
- Biological reasoning
- Text mining
- Literature-grounded machine learning (ML) datasets