Dataset Description
This dataset integrates Gene Ontology (GO) annotations (filtered to experimental evidence, IDA) with bibliographic data from Europe PMC.
Each record links a biological entity (gene/protein) to a GO term and the supporting scientific publication (Title and Abstract).
Columns
- DB, DB_Object_ID, DB_Object_Symbol — Source database and gene/protein identifiers
- Qualifier — Relationship qualifier (e.g.,
NOT,contributes_to) - GO_ID, GO_Name — GO term and its descriptive name
- DB_Reference — Supporting reference (PubMed or other)
- Evidence_Code — Experimental evidence type (e.g.,
IDA) - Aspect — Ontology branch (
P= process,F= function,C= component) - DB_Object_Name, DB_Object_Synonym, DB_Object_Type — Entity metadata
- Taxon — Organism taxonomy ID
- Date, Assigned_By, Annotation_Extension — Annotation metadata
- PMID — PubMed ID for the supporting publication
- Title, Abstract — Publication title and abstract text (fetched from Europe PMC)
Summary
This dataset forms a structured link between curated GO annotations and natural language descriptions of the underlying biology — suitable for:
- Biological reasoning
- Text mining
- Literature-grounded machine learning (ML) datasets