Datasets:

electricsheepafrica
/

africa-cancer-benin

sample_id stringlengths 15 15	population stringclasses 7 values	region stringclasses 5 values	is_SSA bool 2 classes	is_reference_panel bool 2 classes	sex stringclasses 2 values	sequencing_center stringclasses 5 values	sequencing_platform stringclasses 3 values	library_batch int64 1 12	run_year int64 2.01k 2.02k	has_rna bool 2 classes	rna_source stringclasses 3 values	rna_rin float64 1 10 ⌀	rna_yield_ng float64 20.9 5.43k ⌀	rna_read_count_millions float64 5.02 85.2 ⌀	rna_pct_q30 float64 70 100 ⌀	rna_qc_rin_pass bool 2 classes	rna_qc_read_count_pass bool 2 classes	rna_qc_q30_pass bool 2 classes	rna_qc_pass bool 2 classes	has_dna bool 2 classes	dna_source stringclasses 3 values	dna_yield_ng float64 48.4 6.56k ⌀	dna_mean_coverage float64 24.1 118 ⌀	dna_pct_bases_20x float64 76.5 100 ⌀	dna_duplication_rate float64 0 0.46 ⌀	dna_contamination_pct float64 0 3.17 ⌀	dna_qc_coverage_pass bool 2 classes	dna_qc_pct20x_pass bool 2 classes	dna_qc_duplication_pass bool 2 classes	dna_qc_contamination_pass bool 2 classes	dna_qc_pass bool 2 classes
DQ_SAMPLE_00001	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	4	2,023	true	FFPE	3.27	176.7	49.26	89.78	false	true	true	false	true	FFPE	242.9	50.96	96.24	0.271	1.99	true	true	false	true	false
DQ_SAMPLE_00002	SSA_West	West	true	false	Female	Lab_B_USA	NextSeq550	9	2,020	false	null	null	null	null	null	false	false	false	false	true	FFPE	263.5	62.66	97.54	0.272	0.05	true	true	false	true	false
DQ_SAMPLE_00003	SSA_West	West	true	false	Female	Lab_SSA_2	NextSeq550	11	2,017	true	FFPE	4.1	505.8	30.81	83.33	false	true	true	false	true	FFPE	151.8	49.73	91.14	0.169	1.13	true	true	true	true	true
DQ_SAMPLE_00004	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	3	2,012	true	FFPE	5.58	215.6	28.85	92.68	false	true	true	false	true	Blood	644.2	70.74	87.5	0.158	0.53	true	true	true	true	true
DQ_SAMPLE_00005	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	12	2,013	false	null	null	null	null	null	false	false	false	false	true	Blood	459	75.27	85.9	0.147	1.01	true	true	true	true	true
DQ_SAMPLE_00006	SSA_West	West	true	false	Male	Lab_SSA_1	HiSeq4000	3	2,021	true	Fresh_frozen	6.87	967.7	31.24	90.99	true	true	true	true	true	Fresh_frozen	509	68.95	90.08	0.169	0.82	true	true	true	true	true
DQ_SAMPLE_00007	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	12	2,019	true	FFPE	4.77	581.8	39.99	86.32	false	true	true	false	true	Fresh_frozen	500.8	64.63	89.18	0.223	1.34	true	true	true	true	true
DQ_SAMPLE_00008	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	11	2,021	true	FFPE	3.22	201.3	57.46	95.75	false	true	true	false	true	FFPE	265.7	70.13	87.8	0.318	1.02	true	true	false	true	false
DQ_SAMPLE_00009	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	8	2,012	true	Blood_PAXgene	6.54	1,382.2	48.42	93.36	true	true	true	true	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00010	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	1	2,016	true	Fresh_frozen	6.25	390.1	34.78	84.79	false	true	true	false	true	FFPE	739.7	63.4	93.59	0.273	1.55	true	true	false	true	false
DQ_SAMPLE_00011	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	7	2,022	false	null	null	null	null	null	false	false	false	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00012	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	4	2,021	true	FFPE	5.92	298.9	43.24	89.75	false	true	true	false	true	FFPE	221.5	59.89	90.41	0.302	1.2	true	true	false	true	false
DQ_SAMPLE_00013	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	10	2,022	true	FFPE	5.34	507.6	40.72	85.43	false	true	true	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00014	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	6	2,014	true	FFPE	5.29	307.2	49.95	87.62	false	true	true	false	true	FFPE	196	77.19	95.41	0.171	0.52	true	true	true	true	true
DQ_SAMPLE_00015	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	5	2,018	true	FFPE	4.16	187.4	67.18	88.81	false	true	true	false	true	FFPE	286.2	46.92	93.38	0.281	1.45	true	true	false	true	false
DQ_SAMPLE_00016	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	3	2,013	true	FFPE	4.26	125.8	38.61	81.8	false	true	true	false	true	FFPE	342.2	63.63	92.01	0.321	0.35	true	true	false	true	false
DQ_SAMPLE_00017	SSA_West	West	true	false	Female	Lab_A_EUR	NovaSeq6000	5	2,013	true	Blood_PAXgene	7.22	441.5	49.23	91.46	true	true	true	true	true	Fresh_frozen	1,156.8	69.45	90.8	0.168	0.75	true	true	true	true	true
DQ_SAMPLE_00018	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	1	2,013	true	FFPE	5.14	292	51.27	85.31	false	true	true	false	true	FFPE	82.4	62.82	88.12	0.306	0.93	true	true	false	true	false
DQ_SAMPLE_00019	SSA_West	West	true	false	Female	Lab_SSA_2	NextSeq550	3	2,015	true	FFPE	4.66	250.8	22.37	83.15	false	true	true	false	true	Blood	978.7	72.3	85.79	0.162	1.37	true	true	true	true	true
DQ_SAMPLE_00020	SSA_West	West	true	false	Female	Lab_A_EUR	NovaSeq6000	9	2,016	true	Fresh_frozen	8.55	790.5	58.04	88	true	true	true	true	true	Fresh_frozen	625	101.57	97.42	0.03	1.32	true	true	true	true	true
DQ_SAMPLE_00021	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	12	2,019	true	Fresh_frozen	7.32	491.3	25.47	81.64	true	true	true	true	true	Fresh_frozen	751.7	66.2	90.54	0.132	1.5	true	true	true	true	true
DQ_SAMPLE_00022	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	10	2,015	true	FFPE	4.67	248.6	27.8	88.51	false	true	true	false	true	Fresh_frozen	445.7	58.18	94.14	0.182	0	true	true	true	true	true
DQ_SAMPLE_00023	SSA_West	West	true	false	Male	Lab_SSA_2	HiSeq4000	11	2,019	true	FFPE	5.57	392.2	24.64	87.2	false	true	true	false	true	Fresh_frozen	157.9	67.38	100	0.181	2.35	true	true	true	true	true
DQ_SAMPLE_00024	SSA_West	West	true	false	Female	Lab_B_USA	NovaSeq6000	4	2,022	false	null	null	null	null	null	false	false	false	false	true	FFPE	261.4	61.08	85.52	0.256	0.48	true	true	false	true	false
DQ_SAMPLE_00025	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	4	2,018	true	FFPE	5	410.8	33.89	81.84	false	true	true	false	true	FFPE	319.8	67.5	91	0.243	1.91	true	true	true	true	true
DQ_SAMPLE_00026	SSA_West	West	true	false	Female	Lab_SSA_2	NextSeq550	7	2,019	true	FFPE	4.17	209.7	15.19	87.89	false	false	true	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00027	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	12	2,018	true	FFPE	5.83	239.3	29.36	92.5	false	true	true	false	true	Blood	587.5	78.65	95.91	0.09	1.1	true	true	true	true	true
DQ_SAMPLE_00028	SSA_West	West	true	false	Female	Lab_C_EAS	HiSeq4000	4	2,022	true	Fresh_frozen	6.67	721	37.97	83.69	true	true	true	true	true	Fresh_frozen	552.9	67.6	93.46	0.138	2.06	true	true	true	true	true
DQ_SAMPLE_00029	SSA_West	West	true	false	Female	Lab_C_EAS	HiSeq4000	10	2,016	true	Fresh_frozen	8.62	1,149.9	57.65	84.81	true	true	true	true	true	FFPE	553.3	67.96	94.85	0.202	0.77	true	true	true	true	true
DQ_SAMPLE_00030	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	3	2,012	true	Blood_PAXgene	5.94	299	42.98	86.33	false	true	true	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00031	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	2	2,021	true	Fresh_frozen	7.11	1,128.2	40.45	79.88	true	true	false	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00032	SSA_West	West	true	false	Male	Lab_SSA_2	HiSeq4000	1	2,018	true	FFPE	4.73	496.7	34.95	89.26	false	true	true	false	true	FFPE	194.4	60.34	85.38	0.324	1.41	true	true	false	true	false
DQ_SAMPLE_00033	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	1	2,014	false	null	null	null	null	null	false	false	false	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00034	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	12	2,021	true	FFPE	5.18	142.2	25.35	88.88	false	true	true	false	true	Fresh_frozen	1,125.2	64.16	87.15	0.143	0.97	true	true	true	true	true
DQ_SAMPLE_00035	SSA_West	West	true	false	Female	Lab_SSA_2	NextSeq550	4	2,013	true	Fresh_frozen	8.03	548.5	37.81	84.6	true	true	true	true	true	FFPE	544.9	49.24	89.71	0.246	0.88	true	true	true	true	true
DQ_SAMPLE_00036	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	4	2,019	true	FFPE	6.08	317.7	57.67	89.47	false	true	true	false	true	FFPE	265.6	65.81	89.97	0.221	0.8	true	true	true	true	true
DQ_SAMPLE_00037	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	9	2,021	true	FFPE	2.45	313.2	59.1	89.84	false	true	true	false	true	Fresh_frozen	2,368.3	66.98	93.56	0.141	0.81	true	true	true	true	true
DQ_SAMPLE_00038	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	7	2,022	true	FFPE	4.27	141.2	60	95.01	false	true	true	false	true	Fresh_frozen	312.2	86.9	90.42	0.134	0.43	true	true	true	true	true
DQ_SAMPLE_00039	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	5	2,018	false	null	null	null	null	null	false	false	false	false	true	FFPE	317.1	40.14	83.74	0.169	1.48	true	true	true	true	true
DQ_SAMPLE_00040	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	12	2,013	true	FFPE	3.95	124.3	29.98	84.94	false	true	true	false	true	FFPE	485.3	61.47	96.68	0.34	0.26	true	true	false	true	false
DQ_SAMPLE_00041	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	6	2,012	true	Fresh_frozen	8.15	1,622.7	52.85	93.92	true	true	true	true	true	FFPE	519	65.67	91.87	0.314	0.15	true	true	false	true	false
DQ_SAMPLE_00042	SSA_West	West	true	false	Female	Lab_B_USA	NovaSeq6000	2	2,013	false	null	null	null	null	null	false	false	false	false	true	Fresh_frozen	1,486.3	103.83	91.38	0.081	0.89	true	true	true	true	true
DQ_SAMPLE_00043	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	11	2,020	true	FFPE	5.02	674.2	30.01	85.35	false	true	true	false	true	FFPE	286.2	72.18	92.32	0.241	1.45	true	true	true	true	true
DQ_SAMPLE_00044	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	2	2,017	true	FFPE	3.76	180.7	47.54	95.29	false	true	true	false	true	Fresh_frozen	197.9	62.49	91.07	0.227	0.9	true	true	true	true	true
DQ_SAMPLE_00045	SSA_West	West	true	false	Female	Lab_C_EAS	HiSeq4000	2	2,017	true	Blood_PAXgene	8.67	279.4	42.6	91.3	true	true	true	true	true	Fresh_frozen	626.7	70.91	94.75	0.153	1.21	true	true	true	true	true
DQ_SAMPLE_00046	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	8	2,021	true	FFPE	4.12	397	36.26	87.61	false	true	true	false	true	FFPE	247	74.3	83.56	0.239	1.91	true	true	true	true	true
DQ_SAMPLE_00047	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	7	2,018	true	FFPE	6.73	150.9	40.53	81.56	true	true	true	true	true	Blood	363.1	77.8	97.74	0.156	1.66	true	true	true	true	true
DQ_SAMPLE_00048	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	1	2,024	true	FFPE	4.4	260.4	41.03	84.07	false	true	true	false	true	Fresh_frozen	1,249.6	87.6	90.85	0.144	0.03	true	true	true	true	true
DQ_SAMPLE_00049	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	12	2,018	true	Fresh_frozen	7.88	394.5	42.66	88.55	true	true	true	true	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00050	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	2	2,012	true	Blood_PAXgene	6.12	631.4	30.28	84.35	false	true	true	false	true	Fresh_frozen	940.1	81.52	91.34	0.116	1.28	true	true	true	true	true
DQ_SAMPLE_00051	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	6	2,016	true	FFPE	3.84	733.9	48.66	95.66	false	true	true	false	true	FFPE	224.7	49.53	87.33	0.257	1.48	true	true	false	true	false
DQ_SAMPLE_00052	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	11	2,024	true	FFPE	4.65	197.2	48.72	92.95	false	true	true	false	true	FFPE	394.8	48	92.96	0.155	0.79	true	true	true	true	true
DQ_SAMPLE_00053	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	5	2,012	true	FFPE	5.19	147.6	46.76	96.04	false	true	true	false	true	Blood	812.8	67.61	89.16	0.173	1.29	true	true	true	true	true
DQ_SAMPLE_00054	SSA_West	West	true	false	Female	Lab_B_USA	HiSeq4000	3	2,012	true	FFPE	5.85	182	40.68	86.76	false	true	true	false	true	FFPE	307.4	57.58	87.89	0.133	0.62	true	true	true	true	true
DQ_SAMPLE_00055	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	4	2,012	true	FFPE	4.37	131.9	47.79	83.74	false	true	true	false	true	Fresh_frozen	1,101.2	88.06	95.24	0.189	0	true	true	true	true	true
DQ_SAMPLE_00056	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	10	2,024	true	Blood_PAXgene	5.73	164.2	51.71	88.12	false	true	true	false	true	FFPE	279.9	74.61	92.64	0.386	0.5	true	true	false	true	false
DQ_SAMPLE_00057	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	10	2,020	false	null	null	null	null	null	false	false	false	false	true	Fresh_frozen	841.6	71.19	89.48	0.225	1.31	true	true	true	true	true
DQ_SAMPLE_00058	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	6	2,012	true	FFPE	5.88	332.9	56.4	86.85	false	true	true	false	true	Blood	250.6	63.77	90.42	0.185	1.19	true	true	true	true	true
DQ_SAMPLE_00059	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	11	2,013	false	null	null	null	null	null	false	false	false	false	true	FFPE	353.7	51.54	94.92	0.269	1.28	true	true	false	true	false
DQ_SAMPLE_00060	SSA_West	West	true	false	Female	Lab_A_EUR	HiSeq4000	10	2,016	true	FFPE	5.54	70.4	38.7	88.88	false	true	true	false	true	FFPE	731.2	55.75	94.91	0.187	1.13	true	true	true	true	true
DQ_SAMPLE_00061	SSA_West	West	true	false	Female	Lab_C_EAS	HiSeq4000	12	2,017	false	null	null	null	null	null	false	false	false	false	true	Fresh_frozen	549.1	78.5	93.15	0.172	2.09	true	true	true	true	true
DQ_SAMPLE_00062	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	2	2,022	true	FFPE	3.91	907.8	55.67	86.29	false	true	true	false	true	FFPE	415.1	42.61	98.41	0.298	0.39	true	true	false	true	false
DQ_SAMPLE_00063	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	3	2,023	true	FFPE	5.07	125.4	72.37	91.56	false	true	true	false	true	FFPE	429.3	50.31	94.97	0.327	0.66	true	true	false	true	false
DQ_SAMPLE_00064	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	2	2,023	true	FFPE	4.58	252.3	28.06	87.72	false	true	true	false	true	FFPE	438	65.45	89.75	0.362	0.41	true	true	false	true	false
DQ_SAMPLE_00065	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	7	2,014	true	FFPE	5.09	180.7	37.1	90.28	false	true	true	false	true	Fresh_frozen	1,363.4	74.24	90.8	0.112	0.72	true	true	true	true	true
DQ_SAMPLE_00066	SSA_West	West	true	false	Female	Lab_SSA_2	NextSeq550	6	2,015	true	Blood_PAXgene	5.65	225.5	36.29	88.56	false	true	true	false	true	Fresh_frozen	1,658.6	73.01	87.74	0.141	1.44	true	true	true	true	true
DQ_SAMPLE_00067	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	1	2,015	true	FFPE	4.81	96.7	41.75	91.78	false	true	true	false	true	FFPE	416.2	54.26	88.83	0.254	1.69	true	true	false	true	false
DQ_SAMPLE_00068	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	3	2,016	false	null	null	null	null	null	false	false	false	false	true	Fresh_frozen	769.5	91.29	83.9	0.129	0.09	true	true	true	true	true
DQ_SAMPLE_00069	SSA_West	West	true	false	Female	Lab_B_USA	NovaSeq6000	7	2,023	true	FFPE	3.65	276.4	58.31	90.38	false	true	true	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00070	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	11	2,018	true	FFPE	4.91	1,971.3	52.65	87.21	false	true	true	false	true	Blood	498.3	58.01	88.54	0.21	0.98	true	true	true	true	true
DQ_SAMPLE_00071	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	9	2,022	true	FFPE	5.05	370.2	35.96	81.98	false	true	true	false	true	FFPE	495.4	62.01	87.82	0.273	0.66	true	true	false	true	false
DQ_SAMPLE_00072	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	3	2,013	true	FFPE	3.38	282.7	50.27	91.19	false	true	true	false	true	FFPE	168.1	55.6	96.19	0.383	0	true	true	false	true	false
DQ_SAMPLE_00073	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	6	2,020	true	FFPE	4.72	328.6	30.81	69.97	false	true	false	false	true	Blood	306.3	71.72	99.19	0.154	0.85	true	true	true	true	true
DQ_SAMPLE_00074	SSA_West	West	true	false	Female	Lab_B_USA	NovaSeq6000	2	2,019	true	FFPE	5.09	393.6	61.06	90.18	false	true	true	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00075	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	4	2,017	false	null	null	null	null	null	false	false	false	false	false	null	null	null	null	null	null	false	false	false	false	false
DQ_SAMPLE_00076	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	7	2,013	true	FFPE	3.36	369	36.79	84.86	false	true	true	false	true	Blood	299	69.79	99.42	0.209	1.14	true	true	true	true	true
DQ_SAMPLE_00077	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	1	2,016	true	Blood_PAXgene	7.82	424.6	49.91	78.23	true	true	false	false	true	FFPE	662.2	65.74	86.8	0.329	1.14	true	true	false	true	false
DQ_SAMPLE_00078	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	4	2,016	true	FFPE	4.52	639.5	36.1	89.47	false	true	true	false	true	Fresh_frozen	794.7	78.61	89.23	0.214	0.02	true	true	true	true	true
DQ_SAMPLE_00079	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	12	2,018	true	Fresh_frozen	5.51	606.5	53.85	93.43	false	true	true	false	true	Fresh_frozen	1,041.2	80.14	96.67	0.264	0.74	true	true	false	true	false
DQ_SAMPLE_00080	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	3	2,020	true	FFPE	4.16	210.8	40.36	80.87	false	true	true	false	true	FFPE	181.3	60.34	91.89	0.261	0.77	true	true	false	true	false
DQ_SAMPLE_00081	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	3	2,016	true	Fresh_frozen	6.95	923.9	48.42	85.2	true	true	true	true	true	FFPE	157.9	64.17	98.25	0.216	1.09	true	true	true	true	true
DQ_SAMPLE_00082	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	11	2,019	true	Blood_PAXgene	6.89	333	62.2	90.8	true	true	true	true	true	FFPE	529.8	70.04	92.54	0.23	0.79	true	true	true	true	true
DQ_SAMPLE_00083	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	9	2,016	true	FFPE	5.55	156	31.2	86.06	false	true	true	false	true	FFPE	426.3	66.45	94.45	0.326	0.98	true	true	false	true	false
DQ_SAMPLE_00084	SSA_West	West	true	false	Female	Lab_SSA_1	NovaSeq6000	4	2,020	true	FFPE	4.9	239.5	46.39	96.11	false	true	true	false	true	FFPE	984.3	74.46	94.2	0.231	1.08	true	true	true	true	true
DQ_SAMPLE_00085	SSA_West	West	true	false	Female	Lab_B_USA	HiSeq4000	5	2,017	true	Fresh_frozen	7.79	1,632.7	34.15	85.64	true	true	true	true	true	Fresh_frozen	994.5	93.84	91.87	0.005	1.79	true	true	true	true	true
DQ_SAMPLE_00086	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	7	2,012	true	Fresh_frozen	7.69	1,117.7	27.67	80.87	true	true	true	true	true	FFPE	552.1	56.62	98.49	0.233	0.96	true	true	true	true	true
DQ_SAMPLE_00087	SSA_West	West	true	false	Female	Lab_SSA_1	NextSeq550	1	2,014	true	Fresh_frozen	6.28	165.9	36.44	84.23	false	true	true	false	true	FFPE	400.5	68.27	93.68	0.376	0.47	true	true	false	true	false
DQ_SAMPLE_00088	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	9	2,017	true	FFPE	4.41	799.5	40.89	89.84	false	true	true	false	true	FFPE	331.9	71.99	92.7	0.235	1.9	true	true	true	true	true
DQ_SAMPLE_00089	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	8	2,023	true	Fresh_frozen	6.71	1,331.3	47.48	81.55	true	true	true	true	true	FFPE	561.9	66.45	92.95	0.341	0.94	true	true	false	true	false
DQ_SAMPLE_00090	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	4	2,024	false	null	null	null	null	null	false	false	false	false	true	Blood	420.8	70.26	94.77	0.136	0.94	true	true	true	true	true
DQ_SAMPLE_00091	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	2	2,023	true	FFPE	2.97	432.5	43.98	87.59	false	true	true	false	true	FFPE	203.7	55.93	87.39	0.278	0.98	true	true	false	true	false
DQ_SAMPLE_00092	SSA_West	West	true	false	Female	Lab_SSA_2	NextSeq550	8	2,019	true	Fresh_frozen	7.21	232.7	22.89	79.42	true	true	false	false	true	FFPE	896	41.41	90.52	0.234	1.19	true	true	true	true	true
DQ_SAMPLE_00093	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	7	2,020	true	Blood_PAXgene	8.09	360.6	25.74	83.28	true	true	true	true	true	FFPE	475.3	47.87	93.27	0.303	1.25	true	true	false	true	false
DQ_SAMPLE_00094	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	12	2,024	false	null	null	null	null	null	false	false	false	false	true	FFPE	238.7	55.45	95.62	0.298	0.89	true	true	false	true	false
DQ_SAMPLE_00095	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	2	2,015	true	FFPE	6.08	179.3	17.63	82.33	false	false	true	false	true	FFPE	170.6	47.13	90.61	0.276	0.28	true	true	false	true	false
DQ_SAMPLE_00096	SSA_West	West	true	false	Female	Lab_SSA_1	HiSeq4000	5	2,021	false	null	null	null	null	null	false	false	false	false	true	FFPE	223.9	57.43	94.58	0.241	1.35	true	true	true	true	true
DQ_SAMPLE_00097	SSA_West	West	true	false	Female	Lab_C_EAS	NextSeq550	8	2,012	true	Fresh_frozen	7.17	375.6	22.96	96.29	true	true	true	true	true	Fresh_frozen	1,267.4	84.88	89.28	0.164	0.69	true	true	true	true	true
DQ_SAMPLE_00098	SSA_West	West	true	false	Female	Lab_SSA_2	NovaSeq6000	11	2,024	true	Blood_PAXgene	5.15	447.4	48.53	91.51	false	true	true	false	true	FFPE	222.3	37.3	91.69	0.327	0.65	true	true	false	true	false
DQ_SAMPLE_00099	SSA_West	West	true	false	Female	Lab_SSA_2	HiSeq4000	9	2,013	true	FFPE	5.98	196.8	46.08	85.95	false	true	true	false	true	Fresh_frozen	611.3	76.96	95.58	0.214	1.14	true	true	true	true	true
DQ_SAMPLE_00100	SSA_West	West	true	false	Male	Lab_SSA_2	NovaSeq6000	6	2,020	true	FFPE	5.44	141.4	50.73	93.98	false	true	true	false	true	Fresh_frozen	1,111.8	74.05	93.96	0.104	1.56	true	true	true	true	true

End of preview. Expand in Data Studio

SSA Breast Data Quality Benchmarks (Sequencing & Sample QC) | Africa (Electric Sheep Africa metadata inventory)

Size category: 1K<n<10K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa

TL;DR

This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.

What This Dataset Covers

Health datasets help researchers examine disease burden, service delivery, risk factors, outcomes, and public-health program performance.

Dataset context from the existing Hugging Face card: SSA Breast Data Quality Benchmarks (Sequencing & Sample QC, Synthetic) Dataset summary This module provides a synthetic data quality benchmark dataset for breast cancer sequencing studies, focusing on: Batch effects and inter-laboratory variation (sequencing center, platform, batch, run year). RNA quality metrics (RNA integrity number, yield, read depth, %Q30) and QC flags. DNA quality metrics (yield, coverage, %≥20x, duplication, contamination) and QC flags. It is… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-cancer-benin.

Dataset Profile

Field	Value
Hugging Face repo	`electricsheepafrica/africa-cancer-benin`
Sector	health
Topic tags	sequencing-qc, batch-effects, rna-quality, dna-quality, ngs, breast-cancer, sub-saharan-africa
Modalities	`tabular`, `text`
Formats	`parquet`
Size category	`1K<n<10K`
Countries	Benin
ISO3 coverage	`BEN`
Last modified on HF	`2025-11-25 15:50:16+00:00`
Inventory snapshot	`2026-07-16T16:00:34Z`

How To Read This Dataset

Start from the repository files and the dataset viewer when available.
Treat the README context as a fast orientation layer; confirm variable definitions and units in the data files before modeling.
Use explicit country columns when present. When geography is only implied by the title or source metadata, document that assumption in downstream analysis.
Preserve missing values until you have a defensible imputation rule.

Usage

from datasets import load_dataset

ds = load_dataset("electricsheepafrica/africa-cancer-benin")
print(ds)

split_name = next(iter(ds))
table = ds[split_name]
print(table.features)
print(table[:3])

Convert To Pandas When Tabular

from datasets import Dataset

first_split = ds[next(iter(ds))]
if isinstance(first_split, Dataset):
    df = first_split.to_pandas()
    print(df.head())

Data Quality Notes

This card was standardized from the Electric Sheep Africa Hugging Face metadata inventory.
Exact schema, row counts, and source files should be inspected in the repository data files.
Metadata gaps from the inventory: upstream_publisher.
Do not infer policy meaning from labels alone; confirm definitions, units, and methods in the source material.

Source And Provenance

Source context: Electric Sheep Africa metadata inventory
Publisher/source attribution: Public dataset metadata
License: cc-by-nc-4.0
Hugging Face URL: https://huggingface.co/datasets/electricsheepafrica/africa-cancer-benin
Inventory retrieved at: 2026-07-16T16:00:34Z

Suggested Analyses

Inspect schema and missingness before modeling.
Profile variables by geography, time, and subgroup columns where present.
Join with other Electric Sheep Africa datasets using explicit country, year, and indicator fields when available.
Build reproducible notebooks that cite both the original source context and the Electric Sheep Africa Hugging Face repo.

Citation

@misc{electric_sheep_africa_africa_cancer_benin_2026,
  title        = {SSA Breast Data Quality Benchmarks (Sequencing & Sample QC) | Africa (Electric Sheep Africa metadata inventory)},
  author       = {Public dataset metadata},
  year         = {2026},
  url          = {https://huggingface.co/datasets/electricsheepafrica/africa-cancer-benin},
  publisher    = {Hugging Face Datasets, engineered by Electric Sheep Africa},
  howpublished = {\url{https://huggingface.co/datasets/electricsheepafrica/africa-cancer-benin}}
}

License

Released under cc-by-nc-4.0.

Original source rights remain with the original publisher or data provider. Electric Sheep Africa engineering standardizes discovery metadata, documentation, and usage guidance for analysis on Hugging Face.

About Electric Sheep Africa

Electric Sheep Africa publishes ML-ready African public datasets on Hugging Face.

Provenance: metadata-backed README standardized 2026-08-12 by the Electric Sheep Africa README system. Inventory source: catalog/esa_metadata_inventory/master_metadata.jsonl.

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