Datasets:

OTAR3088
/

Variants_IOB

words stringlengths 1 22 ⌀	labels stringclasses 3 values
Molecular	O
Dissection	O
of	O
Xyloglucan	O
Recognition	O
in	O
a	O
Prominent	O
Human	O
Gut	O
Symbiont	O
null	O
Polysaccharide	O
utilization	O
loci	O
(	O
PUL	O
)	O
within	O
the	O
genomes	O
of	O
resident	O
human	O
gut	O
Bacteroidetes	O
are	O
central	O
to	O
the	O
metabolism	O
of	O
the	O
otherwise	O
indigestible	O
complex	O
carbohydrates	O
known	O
as	O
“	O
dietary	O
fiber	O
.”	O
However	O
,	O
functional	O
characterization	O
of	O
PUL	O
lags	O
significantly	O
behind	O
sequencing	O
efforts	O
,	O
which	O
limits	O
physiological	O
understanding	O
of	O
the	O
human	O
-	O
bacterial	O
symbiosis	O
.	O
null	O
In	O
particular	O
,	O
the	O
molecular	O
basis	O
of	O
complex	O
polysaccharide	O
recognition	O
,	O
an	O
essential	O
prerequisite	O
to	O
hydrolysis	O
by	O
cell	O
surface	O
glycosidases	O
and	O
subsequent	O
metabolism	O
,	O
is	O
generally	O
poorly	O
understood	O
.	O
null	O
Here	O
,	O
we	O

End of preview. Expand in Data Studio

Variants IOB files

Train/Test/Dev/All IOB files for variants in text Data produced using this data as a starting point Original source data came from the paper "Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature.", and was filtered into a "light"-version focusing only on variants / mutants. Our motivation here being that we hope to be able to use this data for the training of a NER model, tagging variants in text.

Downloads last month: 17

Size of downloaded dataset files:

1.51 MB

Size of the auto-converted Parquet files:

914 kB

Number of rows:

207,260

Collection including OTAR3088/Variants_IOB

Variants Datasets

Collection

3 items • Updated 2 days ago