Upload 2 files
Browse files- main.py +571 -577
- my_Segmenter.py +1189 -0
main.py
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import os
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import uuid
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import shutil
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import asyncio
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import threading
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from datetime import datetime, timedelta
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from functools import partial
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from pathlib import Path
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from typing import List, Dict, Any
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import
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import
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import
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from
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from fastapi.
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#
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# =========================
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# 初始化
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# =========================
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# =========================
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# 启动
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# =========================
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if __name__ == "__main__":
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uvicorn.run(app, host="0.0.0.0", port=8000)
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import os
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import uuid
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import shutil
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import asyncio
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import threading
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from datetime import datetime, timedelta
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from functools import partial
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from pathlib import Path
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from typing import List, Dict, Any
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import cv2
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import numpy as np
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import torch
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import uvicorn
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from fastapi import FastAPI, UploadFile, File, Form, HTTPException
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from fastapi.middleware.cors import CORSMiddleware
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from fastapi.responses import FileResponse
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from fastapi.staticfiles import StaticFiles
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from MyModel import PollutionDifferenceModel
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from my_Segmenter import Segmenter
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# 新增:SSE进度条依赖
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from fastapi.responses import StreamingResponse
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import json
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from collections import defaultdict
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# 全局进度存储(线程安全)
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batch_progress = defaultdict(dict) # key: request_id, value: {total, current, results, failed}
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progress_lock = threading.Lock()
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# =========================
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# 基础目录初始化
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# =========================
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BASE_DIR = Path(".")
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STATIC_DIR = BASE_DIR / "static"
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STATIC_RESULTS_DIR = STATIC_DIR / "results"
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RUNS_DIR = BASE_DIR / "runs"
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AIR_STATION_DIR = BASE_DIR / "AirStationImage"
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FRONTEND_DIR = BASE_DIR / "frontend"
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for d in [STATIC_DIR, STATIC_RESULTS_DIR, RUNS_DIR, AIR_STATION_DIR]:
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d.mkdir(parents=True, exist_ok=True)
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# =========================
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# 初始化分割模型
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# =========================
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segmenter = Segmenter(dataset="cityscapes", task="semantic", device="cpu")
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# =========================
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# FastAPI 初始化
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# =========================
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app = FastAPI(title="香港空气污染预测")
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app.add_middleware(
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CORSMiddleware,
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allow_origins=["*"],
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allow_credentials=False,
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allow_methods=["*"],
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allow_headers=["*"],
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)
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# 静态目录挂载
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app.mount("/static", StaticFiles(directory=str(STATIC_DIR)), name="static")
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app.mount("/runs", StaticFiles(directory=str(RUNS_DIR)), name="runs")
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app.mount("/AirStationImage", StaticFiles(directory=str(AIR_STATION_DIR)), name="AirStationImage")
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# =========================
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# 启动时清理旧的运行目录
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# =========================
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| 75 |
+
# 在 startup_event 中添加
|
| 76 |
+
@app.on_event("startup")
|
| 77 |
+
async def startup_event():
|
| 78 |
+
# 清理旧文件
|
| 79 |
+
await cleanup_old_runs()
|
| 80 |
+
# 预加载所有模型 ✅
|
| 81 |
+
try:
|
| 82 |
+
for pollutant in MODEL_PATHS.keys():
|
| 83 |
+
load_pollution_model(pollutant)
|
| 84 |
+
print("✅ 所有污染预测模型预加载完成")
|
| 85 |
+
except Exception as e:
|
| 86 |
+
print(f"⚠️ 模型预加载失败: {e}")
|
| 87 |
+
|
| 88 |
+
|
| 89 |
+
# =========================
|
| 90 |
+
# 首页
|
| 91 |
+
# =========================
|
| 92 |
+
@app.get("/")
|
| 93 |
+
async def read_index():
|
| 94 |
+
index_path = FRONTEND_DIR / "index.html"
|
| 95 |
+
if not index_path.exists():
|
| 96 |
+
raise HTTPException(status_code=500, detail="frontend/index.html not found")
|
| 97 |
+
return FileResponse(str(index_path))
|
| 98 |
+
|
| 99 |
+
|
| 100 |
+
# =========================
|
| 101 |
+
# 模型路径
|
| 102 |
+
# =========================
|
| 103 |
+
MODEL_PATHS = {
|
| 104 |
+
"CO": BASE_DIR / "models" / "CO.pth",
|
| 105 |
+
"NO2": BASE_DIR / "models" / "NO2.pth",
|
| 106 |
+
"PM25": BASE_DIR / "models" / "PM25.pth",
|
| 107 |
+
"PM10": BASE_DIR / "models" / "PM10.pth",
|
| 108 |
+
"O3": BASE_DIR / "models" / "O3.pth",
|
| 109 |
+
}
|
| 110 |
+
|
| 111 |
+
loaded_models: Dict[str, PollutionDifferenceModel] = {}
|
| 112 |
+
model_lock = threading.Lock()
|
| 113 |
+
|
| 114 |
+
# =========================
|
| 115 |
+
# 文件上传限制
|
| 116 |
+
# =========================
|
| 117 |
+
MAX_FILE_SIZE = 10 * 1024 * 1024 # 10MB
|
| 118 |
+
ALLOWED_CONTENT_TYPES = {"image/jpeg", "image/png", "image/webp"}
|
| 119 |
+
|
| 120 |
+
# =========================
|
| 121 |
+
# 污染物合理范围校验
|
| 122 |
+
# =========================
|
| 123 |
+
POLLUTANT_RANGES = {
|
| 124 |
+
"CO": (0, 50),
|
| 125 |
+
"NO2": (0, 500),
|
| 126 |
+
"PM25": (0, 999),
|
| 127 |
+
"PM10": (0, 999),
|
| 128 |
+
"O3": (0, 500),
|
| 129 |
+
}
|
| 130 |
+
|
| 131 |
+
|
| 132 |
+
# =========================
|
| 133 |
+
# 工具函数
|
| 134 |
+
# =========================
|
| 135 |
+
def create_request_dirs() -> Dict[str, Any]:
|
| 136 |
+
request_id = uuid.uuid4().hex # 统一使用 str,不再包装成 Path
|
| 137 |
+
base_dir = RUNS_DIR / request_id
|
| 138 |
+
input_dir = base_dir / "input"
|
| 139 |
+
output_dir = base_dir / "output"
|
| 140 |
+
summary_dir = base_dir / "summary"
|
| 141 |
+
|
| 142 |
+
for d in [input_dir, output_dir, summary_dir]:
|
| 143 |
+
d.mkdir(parents=True, exist_ok=True)
|
| 144 |
+
|
| 145 |
+
return {
|
| 146 |
+
"request_id": request_id, # str
|
| 147 |
+
"base_dir": base_dir,
|
| 148 |
+
"input_dir": input_dir,
|
| 149 |
+
"output_dir": output_dir,
|
| 150 |
+
"summary_dir": summary_dir,
|
| 151 |
+
}
|
| 152 |
+
|
| 153 |
+
|
| 154 |
+
# =========================
|
| 155 |
+
# 异步批量处理函数(修复 I/O 错误:读本地路径)
|
| 156 |
+
# =========================
|
| 157 |
+
async def batch_predict_task(
|
| 158 |
+
request_id: str,
|
| 159 |
+
pollutant: str,
|
| 160 |
+
ref_data: float,
|
| 161 |
+
ref_tensor: torch.Tensor,
|
| 162 |
+
model: PollutionDifferenceModel,
|
| 163 |
+
query_file_paths: list, # 改为接收路径列表
|
| 164 |
+
batch_input_dir: Path
|
| 165 |
+
):
|
| 166 |
+
results = []
|
| 167 |
+
failed = []
|
| 168 |
+
total = len(query_file_paths)
|
| 169 |
+
|
| 170 |
+
# 初始化进度
|
| 171 |
+
with progress_lock:
|
| 172 |
+
batch_progress[request_id] = {
|
| 173 |
+
"total": total,
|
| 174 |
+
"current": 0,
|
| 175 |
+
"results": [],
|
| 176 |
+
"failed": [],
|
| 177 |
+
"status": "processing"
|
| 178 |
+
}
|
| 179 |
+
|
| 180 |
+
with torch.no_grad():
|
| 181 |
+
for idx, file_info in enumerate(query_file_paths):
|
| 182 |
+
safe_name = file_info["name"]
|
| 183 |
+
query_path = Path(file_info["path"])
|
| 184 |
+
|
| 185 |
+
try:
|
| 186 |
+
# 🔥 直接读本地已保存的文件,不会有 I/O 错误
|
| 187 |
+
query_np = read_rgb_image(query_path)
|
| 188 |
+
query_tensor = preprocess_image(query_np)
|
| 189 |
+
|
| 190 |
+
# 模型推理
|
| 191 |
+
out = model(ref_tensor, query_tensor)
|
| 192 |
+
model_out = float(out.item())
|
| 193 |
+
final_pred = ref_data + model_out
|
| 194 |
+
|
| 195 |
+
results.append({
|
| 196 |
+
"filename": safe_name,
|
| 197 |
+
"status": "ok",
|
| 198 |
+
"pred_value": round(final_pred, 4),
|
| 199 |
+
"model_out": round(model_out, 4),
|
| 200 |
+
})
|
| 201 |
+
|
| 202 |
+
except Exception as e:
|
| 203 |
+
error_msg = f"文件:{safe_name},错误:{str(e)}"
|
| 204 |
+
print(f"【批量预测失败】{error_msg}")
|
| 205 |
+
|
| 206 |
+
failed.append({
|
| 207 |
+
"filename": safe_name,
|
| 208 |
+
"status": "error",
|
| 209 |
+
"message": str(e)
|
| 210 |
+
})
|
| 211 |
+
|
| 212 |
+
# 更新进度
|
| 213 |
+
with progress_lock:
|
| 214 |
+
batch_progress[request_id]["current"] = idx + 1
|
| 215 |
+
batch_progress[request_id]["results"] = results
|
| 216 |
+
batch_progress[request_id]["failed"] = failed
|
| 217 |
+
|
| 218 |
+
await asyncio.sleep(0.05)
|
| 219 |
+
|
| 220 |
+
# 标记完成
|
| 221 |
+
with progress_lock:
|
| 222 |
+
batch_progress[request_id]["status"] = "completed"
|
| 223 |
+
print(f"【批量任务完成】{request_id} | 成功:{len(results)} 张,失败:{len(failed)} 张")
|
| 224 |
+
|
| 225 |
+
async def save_upload_file(upload_file: UploadFile, save_path: Path) -> None:
|
| 226 |
+
"""保存上传文件,同时校验大小与类型。"""
|
| 227 |
+
content = await upload_file.read()
|
| 228 |
+
|
| 229 |
+
if not content:
|
| 230 |
+
raise HTTPException(status_code=400, detail=f"上传文件为空: {upload_file.filename}")
|
| 231 |
+
|
| 232 |
+
if len(content) > MAX_FILE_SIZE:
|
| 233 |
+
raise HTTPException(status_code=413, detail=f"文件过大(最大 10MB): {upload_file.filename}")
|
| 234 |
+
|
| 235 |
+
if upload_file.content_type not in ALLOWED_CONTENT_TYPES:
|
| 236 |
+
raise HTTPException(
|
| 237 |
+
status_code=415,
|
| 238 |
+
detail=f"不支持的文件类型 '{upload_file.content_type}',仅支持 JPEG / PNG / WebP"
|
| 239 |
+
)
|
| 240 |
+
|
| 241 |
+
save_path.write_bytes(content)
|
| 242 |
+
|
| 243 |
+
|
| 244 |
+
def preprocess_image(img_np: np.ndarray) -> torch.Tensor:
|
| 245 |
+
img = cv2.resize(img_np, (256, 256))
|
| 246 |
+
img = img.astype(np.float32) / 255.0
|
| 247 |
+
img = img.transpose(2, 0, 1)
|
| 248 |
+
return torch.from_numpy(img).unsqueeze(0)
|
| 249 |
+
|
| 250 |
+
|
| 251 |
+
def read_rgb_image(path: Path) -> np.ndarray:
|
| 252 |
+
img = cv2.imread(str(path))
|
| 253 |
+
if img is None:
|
| 254 |
+
raise HTTPException(status_code=400, detail=f"无法读取图像: {path.name}")
|
| 255 |
+
return cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
|
| 256 |
+
|
| 257 |
+
|
| 258 |
+
# 替换原 load_pollution_model 函数
|
| 259 |
+
def load_pollution_model(pollutant: str) -> PollutionDifferenceModel:
|
| 260 |
+
"""线程安全的模型加载(双重检查锁定)+ 非阻塞优化"""
|
| 261 |
+
if pollutant not in MODEL_PATHS:
|
| 262 |
+
raise HTTPException(status_code=400, detail=f"不支持的污染物类型: {pollutant}")
|
| 263 |
+
|
| 264 |
+
if pollutant in loaded_models:
|
| 265 |
+
return loaded_models[pollutant]
|
| 266 |
+
|
| 267 |
+
with model_lock:
|
| 268 |
+
if pollutant not in loaded_models:
|
| 269 |
+
model_path = MODEL_PATHS[pollutant]
|
| 270 |
+
if not model_path.exists():
|
| 271 |
+
raise HTTPException(status_code=500, detail=f"模型文件不存在: {model_path}")
|
| 272 |
+
|
| 273 |
+
# ✅ 关键修复:weights_only=True 防止安全问题+加速加载
|
| 274 |
+
checkpoint = torch.load(
|
| 275 |
+
str(model_path),
|
| 276 |
+
map_location="cpu",
|
| 277 |
+
weights_only=True
|
| 278 |
+
)
|
| 279 |
+
|
| 280 |
+
model = PollutionDifferenceModel(num_classes=19, pollution_dims=1)
|
| 281 |
+
|
| 282 |
+
# ✅ 兼容模型加载
|
| 283 |
+
if isinstance(checkpoint, dict) and "model" in checkpoint:
|
| 284 |
+
model.load_state_dict(checkpoint["model"])
|
| 285 |
+
else:
|
| 286 |
+
model.load_state_dict(checkpoint)
|
| 287 |
+
|
| 288 |
+
model.eval()
|
| 289 |
+
|
| 290 |
+
# ✅ 优化推理速度:启用推理模式
|
| 291 |
+
torch.set_grad_enabled(False)
|
| 292 |
+
loaded_models[pollutant] = model
|
| 293 |
+
|
| 294 |
+
return loaded_models[pollutant]
|
| 295 |
+
|
| 296 |
+
|
| 297 |
+
async def run_segmentation_async(input_dir: Path, output_dir: Path, summary_dir: Path) -> None:
|
| 298 |
+
"""在线程池中异步执行语义分割,避免阻塞事件循环。"""
|
| 299 |
+
loop = asyncio.get_event_loop()
|
| 300 |
+
await loop.run_in_executor(
|
| 301 |
+
None,
|
| 302 |
+
partial(
|
| 303 |
+
segmenter.segment,
|
| 304 |
+
dir_input=str(input_dir),
|
| 305 |
+
dir_image_output=str(output_dir),
|
| 306 |
+
dir_summary_output=str(summary_dir)
|
| 307 |
+
)
|
| 308 |
+
)
|
| 309 |
+
|
| 310 |
+
|
| 311 |
+
def find_segmented_img(output_dir: Path, base_name: str) -> Path | None:
|
| 312 |
+
"""确定性地查找分割结果图像(排序后取第一个)。"""
|
| 313 |
+
candidates = sorted([
|
| 314 |
+
f for f in output_dir.iterdir()
|
| 315 |
+
if base_name in f.name and "colored_segmented" in f.name
|
| 316 |
+
])
|
| 317 |
+
return candidates[0] if candidates else None
|
| 318 |
+
|
| 319 |
+
|
| 320 |
+
def find_blend_img(output_dir: Path, base_name: str) -> Path | None:
|
| 321 |
+
"""确定性地查找融合结果图像(排序后取第一个)。"""
|
| 322 |
+
candidates = sorted([
|
| 323 |
+
f for f in output_dir.iterdir()
|
| 324 |
+
if base_name in f.name and "blend" in f.name
|
| 325 |
+
])
|
| 326 |
+
return candidates[0] if candidates else None
|
| 327 |
+
|
| 328 |
+
|
| 329 |
+
def copy_segmentation_outputs(output_dir: Path, request_id: str) -> Dict[str, str]:
|
| 330 |
+
ref_seg_path = find_segmented_img(output_dir, "ref")
|
| 331 |
+
query_seg_path = find_segmented_img(output_dir, "query")
|
| 332 |
+
ref_blend_path = find_blend_img(output_dir, "ref")
|
| 333 |
+
query_blend_path = find_blend_img(output_dir, "query")
|
| 334 |
+
|
| 335 |
+
if not ref_seg_path or not query_seg_path:
|
| 336 |
+
raise HTTPException(status_code=500, detail="找不到分割结果图像")
|
| 337 |
+
|
| 338 |
+
target_ref = STATIC_RESULTS_DIR / f"{request_id}_ref_seg.png"
|
| 339 |
+
target_query = STATIC_RESULTS_DIR / f"{request_id}_query_seg.png"
|
| 340 |
+
target_ref_blend = STATIC_RESULTS_DIR / f"{request_id}_ref_blend.png"
|
| 341 |
+
target_query_blend = STATIC_RESULTS_DIR / f"{request_id}_query_blend.png"
|
| 342 |
+
|
| 343 |
+
shutil.copy(ref_seg_path, target_ref)
|
| 344 |
+
shutil.copy(query_seg_path, target_query)
|
| 345 |
+
|
| 346 |
+
if ref_blend_path and ref_blend_path.exists():
|
| 347 |
+
shutil.copy(ref_blend_path, target_ref_blend)
|
| 348 |
+
if query_blend_path and query_blend_path.exists():
|
| 349 |
+
shutil.copy(query_blend_path, target_query_blend)
|
| 350 |
+
|
| 351 |
+
return {
|
| 352 |
+
"ref_seg": f"/static/results/{request_id}_ref_seg.png",
|
| 353 |
+
"query_seg": f"/static/results/{request_id}_query_seg.png",
|
| 354 |
+
"ref_blend": f"/static/results/{request_id}_ref_blend.png" if target_ref_blend.exists() else "",
|
| 355 |
+
"query_blend": f"/static/results/{request_id}_query_blend.png" if target_query_blend.exists() else "",
|
| 356 |
+
}
|
| 357 |
+
|
| 358 |
+
|
| 359 |
+
def infer_difference(
|
| 360 |
+
model: PollutionDifferenceModel,
|
| 361 |
+
ref_tensor: torch.Tensor,
|
| 362 |
+
query_tensor: torch.Tensor
|
| 363 |
+
) -> float:
|
| 364 |
+
with torch.no_grad():
|
| 365 |
+
out = model(ref_tensor, query_tensor)
|
| 366 |
+
return float(out.item())
|
| 367 |
+
|
| 368 |
+
|
| 369 |
+
def validate_ref_data(pollutant: str, ref_data: float) -> None:
|
| 370 |
+
"""服务端校验参考值合理范围。"""
|
| 371 |
+
if pollutant not in POLLUTANT_RANGES:
|
| 372 |
+
raise HTTPException(status_code=400, detail=f"不支持的污染物: {pollutant}")
|
| 373 |
+
|
| 374 |
+
lo, hi = POLLUTANT_RANGES[pollutant]
|
| 375 |
+
if ref_data < lo:
|
| 376 |
+
raise HTTPException(status_code=422, detail=f"{pollutant} 参考值不能为负数")
|
| 377 |
+
if ref_data > hi:
|
| 378 |
+
raise HTTPException(
|
| 379 |
+
status_code=422,
|
| 380 |
+
detail=f"{pollutant} 参考值 {ref_data} 超出合理范围(最大 {hi})"
|
| 381 |
+
)
|
| 382 |
+
|
| 383 |
+
|
| 384 |
+
async def cleanup_old_runs(max_age_hours: int = 24) -> None:
|
| 385 |
+
"""清理超过指定小时数的旧运行目录,释放磁盘空间。"""
|
| 386 |
+
cutoff = datetime.now() - timedelta(hours=max_age_hours)
|
| 387 |
+
if not RUNS_DIR.exists():
|
| 388 |
+
return
|
| 389 |
+
for run_dir in RUNS_DIR.iterdir():
|
| 390 |
+
if run_dir.is_dir():
|
| 391 |
+
try:
|
| 392 |
+
mtime = datetime.fromtimestamp(run_dir.stat().st_mtime)
|
| 393 |
+
if mtime < cutoff:
|
| 394 |
+
shutil.rmtree(run_dir, ignore_errors=True)
|
| 395 |
+
except Exception:
|
| 396 |
+
pass # 跳过无法访问的目录
|
| 397 |
+
|
| 398 |
+
|
| 399 |
+
# =========================
|
| 400 |
+
# 单图预测
|
| 401 |
+
# =========================
|
| 402 |
+
@app.post("/predict")
|
| 403 |
+
async def predict(
|
| 404 |
+
pollutant: str = Form(...),
|
| 405 |
+
ref_data: float = Form(...),
|
| 406 |
+
ref_img: UploadFile = File(...),
|
| 407 |
+
query_img: UploadFile = File(...)
|
| 408 |
+
):
|
| 409 |
+
try:
|
| 410 |
+
# 服务端输入校验
|
| 411 |
+
validate_ref_data(pollutant, ref_data)
|
| 412 |
+
|
| 413 |
+
paths = create_request_dirs()
|
| 414 |
+
request_id = paths["request_id"] # 现在是纯 str
|
| 415 |
+
input_dir = paths["input_dir"]
|
| 416 |
+
output_dir = paths["output_dir"]
|
| 417 |
+
summary_dir = paths["summary_dir"]
|
| 418 |
+
|
| 419 |
+
ref_path = input_dir / "ref.jpg"
|
| 420 |
+
query_path = input_dir / "query.jpg"
|
| 421 |
+
|
| 422 |
+
await save_upload_file(ref_img, ref_path)
|
| 423 |
+
await save_upload_file(query_img, query_path)
|
| 424 |
+
|
| 425 |
+
# 异步语义分割(不阻塞事件循环)
|
| 426 |
+
await run_segmentation_async(input_dir, output_dir, summary_dir)
|
| 427 |
+
|
| 428 |
+
# 复制结果图到 static/results
|
| 429 |
+
seg_urls = copy_segmentation_outputs(output_dir, request_id)
|
| 430 |
+
|
| 431 |
+
# 读取图像并推理
|
| 432 |
+
ref_tensor = preprocess_image(read_rgb_image(ref_path))
|
| 433 |
+
query_tensor = preprocess_image(read_rgb_image(query_path))
|
| 434 |
+
|
| 435 |
+
model = load_pollution_model(pollutant)
|
| 436 |
+
model_out = infer_difference(model, ref_tensor, query_tensor)
|
| 437 |
+
final_pred = ref_data + model_out
|
| 438 |
+
|
| 439 |
+
ratio_json_path = summary_dir / "pixel_ratios.json"
|
| 440 |
+
if not ratio_json_path.exists():
|
| 441 |
+
raise HTTPException(status_code=500, detail="分割后未找到 pixel_ratios.json")
|
| 442 |
+
|
| 443 |
+
return {
|
| 444 |
+
"status": "ok",
|
| 445 |
+
"request_id": request_id,
|
| 446 |
+
"pollutant": pollutant,
|
| 447 |
+
"ref_data": ref_data,
|
| 448 |
+
"model_out": round(model_out, 4),
|
| 449 |
+
"pred_value": round(final_pred, 4),
|
| 450 |
+
"ref_seg": seg_urls["ref_seg"],
|
| 451 |
+
"query_seg": seg_urls["query_seg"],
|
| 452 |
+
"ref_blend": seg_urls["ref_blend"],
|
| 453 |
+
"query_blend": seg_urls["query_blend"],
|
| 454 |
+
"ratio_json": f"/runs/{request_id}/summary/pixel_ratios.json"
|
| 455 |
+
}
|
| 456 |
+
|
| 457 |
+
except HTTPException:
|
| 458 |
+
raise
|
| 459 |
+
except Exception as e:
|
| 460 |
+
raise HTTPException(status_code=500, detail=f"预测失败: {str(e)}")
|
| 461 |
+
|
| 462 |
+
|
| 463 |
+
# =========================
|
| 464 |
+
# 批量预测(修复 I/O 错误:先保存所有文件)
|
| 465 |
+
# =========================
|
| 466 |
+
@app.post("/batch-predict")
|
| 467 |
+
async def batch_predict(
|
| 468 |
+
pollutant: str = Form(...),
|
| 469 |
+
ref_data: float = Form(...),
|
| 470 |
+
ref_img: UploadFile = File(...),
|
| 471 |
+
query_files: List[UploadFile] = File(...)
|
| 472 |
+
):
|
| 473 |
+
try:
|
| 474 |
+
validate_ref_data(pollutant, ref_data)
|
| 475 |
+
|
| 476 |
+
if not query_files:
|
| 477 |
+
raise HTTPException(status_code=400, detail="未上传任何查询图像")
|
| 478 |
+
|
| 479 |
+
paths = create_request_dirs()
|
| 480 |
+
request_id = paths["request_id"]
|
| 481 |
+
batch_input_dir = paths["input_dir"]
|
| 482 |
+
|
| 483 |
+
# 1. 先保存参考图
|
| 484 |
+
ref_path = batch_input_dir / "ref.jpg"
|
| 485 |
+
await save_upload_file(ref_img, ref_path)
|
| 486 |
+
ref_tensor = preprocess_image(read_rgb_image(ref_path))
|
| 487 |
+
model = load_pollution_model(pollutant)
|
| 488 |
+
|
| 489 |
+
# 🔥 核心修复:接口返回前,先把所有查询图片保存到本地
|
| 490 |
+
query_file_paths = []
|
| 491 |
+
for file in query_files:
|
| 492 |
+
safe_name = os.path.basename(file.filename) if file.filename else f"{uuid.uuid4().hex}.jpg"
|
| 493 |
+
query_path = batch_input_dir / safe_name
|
| 494 |
+
# 提前保存文件
|
| 495 |
+
await save_upload_file(file, query_path)
|
| 496 |
+
query_file_paths.append({
|
| 497 |
+
"path": str(query_path), # 只传路径,不传文件对象
|
| 498 |
+
"name": safe_name
|
| 499 |
+
})
|
| 500 |
+
|
| 501 |
+
# 2. 启动后台任务(只传路径,不传 UploadFile)
|
| 502 |
+
asyncio.create_task(
|
| 503 |
+
batch_predict_task(
|
| 504 |
+
request_id=request_id,
|
| 505 |
+
pollutant=pollutant,
|
| 506 |
+
ref_data=ref_data,
|
| 507 |
+
ref_tensor=ref_tensor,
|
| 508 |
+
model=model,
|
| 509 |
+
query_file_paths=query_file_paths, # 传路径列表
|
| 510 |
+
batch_input_dir=batch_input_dir
|
| 511 |
+
)
|
| 512 |
+
)
|
| 513 |
+
|
| 514 |
+
return {
|
| 515 |
+
"status": "processing",
|
| 516 |
+
"request_id": request_id,
|
| 517 |
+
"total_files": len(query_files)
|
| 518 |
+
}
|
| 519 |
+
|
| 520 |
+
except HTTPException:
|
| 521 |
+
raise
|
| 522 |
+
except Exception as e:
|
| 523 |
+
raise HTTPException(status_code=500, detail=f"批量预测启动失败: {str(e)}")
|
| 524 |
+
|
| 525 |
+
|
| 526 |
+
# =========================
|
| 527 |
+
# 批量预测进度推送(SSE)【修复语法错误版】
|
| 528 |
+
# =========================
|
| 529 |
+
@app.get("/progress/{request_id}")
|
| 530 |
+
async def get_batch_progress(request_id: str):
|
| 531 |
+
"""SSE接口:前端监听此接口获取实时进度"""
|
| 532 |
+
async def event_generator():
|
| 533 |
+
while True:
|
| 534 |
+
# 获取进度
|
| 535 |
+
progress = batch_progress.get(request_id, {})
|
| 536 |
+
if not progress:
|
| 537 |
+
yield 'data: {"error": "任务不存在"}\n\n'
|
| 538 |
+
break
|
| 539 |
+
|
| 540 |
+
# 【修复】把json提出来,避免f-string换行语法错误
|
| 541 |
+
progress_data = {
|
| 542 |
+
'total': progress.get('total', 0),
|
| 543 |
+
'current': progress.get('current', 0),
|
| 544 |
+
'status': progress.get('status', 'processing'),
|
| 545 |
+
'results': progress.get('results', []),
|
| 546 |
+
'failed': progress.get('failed', [])
|
| 547 |
+
}
|
| 548 |
+
# 【关键修复】一行写完,不换行!
|
| 549 |
+
yield f"data: {json.dumps(progress_data)}\n\n"
|
| 550 |
+
|
| 551 |
+
# 任务完成/失败,停止推送
|
| 552 |
+
if progress.get("status") in ["completed", "failed"]:
|
| 553 |
+
break
|
| 554 |
+
|
| 555 |
+
# 每100ms推送1次
|
| 556 |
+
await asyncio.sleep(0.1)
|
| 557 |
+
|
| 558 |
+
return StreamingResponse(event_generator(), media_type="text/event-stream")
|
| 559 |
+
|
| 560 |
+
# =========================
|
| 561 |
+
# 健康检查
|
| 562 |
+
# =========================
|
| 563 |
+
@app.get("/health")
|
| 564 |
+
async def health_check():
|
| 565 |
+
return {"status": "ok"}
|
| 566 |
+
|
| 567 |
+
|
| 568 |
+
# =========================
|
| 569 |
+
# 启动
|
| 570 |
+
# =========================
|
| 571 |
+
if __name__ == "__main__":
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 572 |
uvicorn.run(app, host="0.0.0.0", port=8000)
|
my_Segmenter.py
ADDED
|
@@ -0,0 +1,1189 @@
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|
| 1 |
+
import glob
|
| 2 |
+
import json
|
| 3 |
+
import shutil
|
| 4 |
+
from collections import defaultdict, namedtuple
|
| 5 |
+
from concurrent.futures import ThreadPoolExecutor, as_completed
|
| 6 |
+
from math import ceil
|
| 7 |
+
from pathlib import Path
|
| 8 |
+
from typing import Dict, List, Optional, Tuple, Union
|
| 9 |
+
|
| 10 |
+
import cv2
|
| 11 |
+
import numpy as np
|
| 12 |
+
import pandas as pd
|
| 13 |
+
import torch
|
| 14 |
+
from torch.utils.data import DataLoader, Dataset
|
| 15 |
+
from tqdm.contrib.concurrent import thread_map
|
| 16 |
+
from transformers import AutoImageProcessor, Mask2FormerForUniversalSegmentation
|
| 17 |
+
|
| 18 |
+
from zensvi.utils.log import verbosity_tqdm
|
| 19 |
+
|
| 20 |
+
# a label and all meta information
|
| 21 |
+
_Label = namedtuple(
|
| 22 |
+
"_Label",
|
| 23 |
+
[
|
| 24 |
+
"name", # The identifier of this label, e.g. 'car', 'person', ... .
|
| 25 |
+
# We use them to uniquely name a class
|
| 26 |
+
"id", # An integer ID that is associated with this label.
|
| 27 |
+
# The IDs are used to represent the label in ground truth images
|
| 28 |
+
# An ID of -1 means that this label does not have an ID and thus
|
| 29 |
+
# is ignored when creating ground truth images (e.g. license plate).
|
| 30 |
+
# Do not modify these IDs, since exactly these IDs are expected by the
|
| 31 |
+
# evaluation server.
|
| 32 |
+
"trainId", # Feel free to modify these IDs as suitable for your method. Then create
|
| 33 |
+
# ground truth images with train IDs, using the tools provided in the
|
| 34 |
+
# 'preparation' folder. However, make sure to validate or submit results
|
| 35 |
+
# to our evaluation server using the regular IDs above!
|
| 36 |
+
# For trainIds, multiple labels might have the same ID. Then, these labels
|
| 37 |
+
# are mapped to the same class in the ground truth images. For the inverse
|
| 38 |
+
# mapping, we use the label that is defined first in the list below.
|
| 39 |
+
# For example, mapping all void-type classes to the same ID in training,
|
| 40 |
+
# might make sense for some approaches.
|
| 41 |
+
# Max value is 255!
|
| 42 |
+
"category", # The name of the category that this label belongs to
|
| 43 |
+
"categoryId", # The ID of this category. Used to create ground truth images
|
| 44 |
+
# on category level.
|
| 45 |
+
"hasInstances", # Whether this label distinguishes between single instances or not
|
| 46 |
+
"ignoreInEval", # Whether pixels having this class as ground truth label are ignored
|
| 47 |
+
# during evaluations or not
|
| 48 |
+
"color", # The color of this label
|
| 49 |
+
],
|
| 50 |
+
)
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
def _create_cityscapes_label_colormap() -> List[_Label]:
|
| 54 |
+
"""Creates a label colormap used in CITYSCAPES segmentation benchmark.
|
| 55 |
+
|
| 56 |
+
Args:
|
| 57 |
+
|
| 58 |
+
Returns:
|
| 59 |
+
: A colormap for visualizing segmentation results.
|
| 60 |
+
|
| 61 |
+
"""
|
| 62 |
+
labels = [
|
| 63 |
+
# name id trainId category catId hasInstances ignoreInEval color
|
| 64 |
+
_Label("unlabeled", 0, 255, "void", 0, False, True, (0, 0, 0)),
|
| 65 |
+
_Label("ego vehicle", 1, 255, "void", 0, False, True, (0, 0, 0)),
|
| 66 |
+
_Label("rectification border", 2, 255, "void", 0, False, True, (0, 0, 0)),
|
| 67 |
+
_Label("out of roi", 3, 255, "void", 0, False, True, (0, 0, 0)),
|
| 68 |
+
_Label("static", 4, 255, "void", 0, False, True, (0, 0, 0)),
|
| 69 |
+
_Label("dynamic", 5, 255, "void", 0, False, True, (111, 74, 0)),
|
| 70 |
+
_Label("ground", 6, 255, "void", 0, False, True, (81, 0, 81)),
|
| 71 |
+
_Label("road", 7, 0, "flat", 1, False, False, (128, 64, 128)),
|
| 72 |
+
_Label("sidewalk", 8, 1, "flat", 1, False, False, (244, 35, 232)),
|
| 73 |
+
_Label("parking", 9, 255, "flat", 1, False, True, (250, 170, 160)),
|
| 74 |
+
_Label("rail track", 10, 255, "flat", 1, False, True, (230, 150, 140)),
|
| 75 |
+
_Label("building", 11, 2, "construction", 2, False, False, (70, 70, 70)),
|
| 76 |
+
_Label("wall", 12, 3, "construction", 2, False, False, (102, 102, 156)),
|
| 77 |
+
_Label("fence", 13, 4, "construction", 2, False, False, (190, 153, 153)),
|
| 78 |
+
_Label("guard rail", 14, 255, "construction", 2, False, True, (180, 165, 180)),
|
| 79 |
+
_Label("bridge", 15, 255, "construction", 2, False, True, (150, 100, 100)),
|
| 80 |
+
_Label("tunnel", 16, 255, "construction", 2, False, True, (150, 120, 90)),
|
| 81 |
+
_Label("pole", 17, 5, "object", 3, False, False, (153, 153, 153)),
|
| 82 |
+
_Label("polegroup", 18, 255, "object", 3, False, True, (153, 153, 153)),
|
| 83 |
+
_Label("traffic light", 19, 6, "object", 3, False, False, (250, 170, 30)),
|
| 84 |
+
_Label("traffic sign", 20, 7, "object", 3, False, False, (220, 220, 0)),
|
| 85 |
+
_Label("vegetation", 21, 8, "nature", 4, False, False, (107, 142, 35)),
|
| 86 |
+
_Label("terrain", 22, 9, "nature", 4, False, False, (152, 251, 152)),
|
| 87 |
+
_Label("sky", 23, 10, "sky", 5, False, False, (70, 130, 180)),
|
| 88 |
+
_Label("person", 24, 11, "human", 6, True, False, (220, 20, 60)),
|
| 89 |
+
_Label("rider", 25, 12, "human", 6, True, False, (255, 0, 0)),
|
| 90 |
+
_Label("car", 26, 13, "vehicle", 7, True, False, (0, 0, 142)),
|
| 91 |
+
_Label("truck", 27, 14, "vehicle", 7, True, False, (0, 0, 70)),
|
| 92 |
+
_Label("bus", 28, 15, "vehicle", 7, True, False, (0, 60, 100)),
|
| 93 |
+
_Label("caravan", 29, 255, "vehicle", 7, True, True, (0, 0, 90)),
|
| 94 |
+
_Label("trailer", 30, 255, "vehicle", 7, True, True, (0, 0, 110)),
|
| 95 |
+
_Label("train", 31, 16, "vehicle", 7, True, False, (0, 80, 100)),
|
| 96 |
+
_Label("motorcycle", 32, 17, "vehicle", 7, True, False, (0, 0, 230)),
|
| 97 |
+
_Label("bicycle", 33, 18, "vehicle", 7, True, False, (119, 11, 32)),
|
| 98 |
+
_Label("license plate", -1, -1, "vehicle", 7, False, True, (0, 0, 142)),
|
| 99 |
+
]
|
| 100 |
+
return labels
|
| 101 |
+
|
| 102 |
+
|
| 103 |
+
def _create_mapillary_vistas_label_colormap() -> List[_Label]:
|
| 104 |
+
"""Creates a label colormap used in Mapillary Vistas segmentation benchmark.
|
| 105 |
+
|
| 106 |
+
Args:
|
| 107 |
+
|
| 108 |
+
Returns:
|
| 109 |
+
: A list of labels for visualizing segmentation results.
|
| 110 |
+
|
| 111 |
+
"""
|
| 112 |
+
labels = [
|
| 113 |
+
_Label("Bird", 0, 0, "animal", 0, True, False, (165, 42, 42)),
|
| 114 |
+
_Label("Ground Animal", 1, 1, "animal", 0, True, False, (0, 192, 0)),
|
| 115 |
+
_Label("Curb", 2, 2, "construction", 1, False, False, (196, 196, 196)),
|
| 116 |
+
_Label("Fence", 3, 3, "construction", 1, False, False, (190, 153, 153)),
|
| 117 |
+
_Label("Guard Rail", 4, 4, "construction", 1, False, False, (180, 165, 180)),
|
| 118 |
+
_Label("Barrier", 5, 5, "construction", 1, False, False, (102, 102, 156)),
|
| 119 |
+
_Label("Wall", 6, 6, "construction", 1, False, False, (102, 102, 156)),
|
| 120 |
+
_Label("Bike Lane", 7, 7, "flat", 2, False, False, (128, 64, 255)),
|
| 121 |
+
_Label("Crosswalk - Plain", 8, 8, "flat", 2, False, False, (140, 140, 200)),
|
| 122 |
+
_Label("Curb Cut", 9, 9, "flat", 2, False, False, (170, 170, 170)),
|
| 123 |
+
_Label("Parking", 10, 10, "flat", 2, False, False, (250, 170, 160)),
|
| 124 |
+
_Label("Pedestrian Area", 11, 11, "flat", 2, False, False, (96, 96, 96)),
|
| 125 |
+
_Label("Rail Track", 12, 12, "flat", 2, False, False, (230, 150, 140)),
|
| 126 |
+
_Label("Road", 13, 13, "flat", 2, False, False, (128, 64, 128)),
|
| 127 |
+
_Label("Service Lane", 14, 14, "flat", 2, False, False, (110, 110, 110)),
|
| 128 |
+
_Label("Sidewalk", 15, 15, "flat", 2, False, False, (244, 35, 232)),
|
| 129 |
+
_Label("Bridge", 16, 16, "construction", 1, False, False, (150, 100, 100)),
|
| 130 |
+
_Label("Building", 17, 17, "construction", 1, False, False, (70, 70, 70)),
|
| 131 |
+
_Label("Tunnel", 18, 18, "construction", 1, False, False, (150, 120, 90)),
|
| 132 |
+
_Label("Person", 19, 19, "human", 3, True, False, (220, 20, 60)),
|
| 133 |
+
_Label("Bicyclist", 20, 20, "human", 3, True, False, (255, 0, 0)),
|
| 134 |
+
_Label("Motorcyclist", 21, 21, "human", 3, True, False, (255, 0, 0)),
|
| 135 |
+
_Label("Other Rider", 22, 22, "human", 3, True, False, (255, 0, 0)),
|
| 136 |
+
_Label(
|
| 137 |
+
"Lane Marking - Crosswalk",
|
| 138 |
+
23,
|
| 139 |
+
23,
|
| 140 |
+
"marking",
|
| 141 |
+
4,
|
| 142 |
+
False,
|
| 143 |
+
True,
|
| 144 |
+
(200, 128, 128),
|
| 145 |
+
),
|
| 146 |
+
_Label("Lane Marking - General", 24, 24, "marking", 4, True, False, (255, 255, 255)),
|
| 147 |
+
_Label("Mountain", 25, 25, "nature", 5, False, False, (64, 170, 64)),
|
| 148 |
+
_Label("Sand", 26, 26, "nature", 5, False, False, (230, 160, 50)),
|
| 149 |
+
_Label("Sky", 27, 27, "sky", 6, False, False, (70, 130, 180)),
|
| 150 |
+
_Label("Snow", 28, 28, "nature", 5, False, False, (190, 255, 255)),
|
| 151 |
+
_Label("Terrain", 29, 29, "nature", 5, False, False, (152, 251, 152)),
|
| 152 |
+
_Label("Vegetation", 30, 30, "nature", 5, False, False, (107, 142, 35)),
|
| 153 |
+
_Label("Water", 31, 31, "water", 7, False, False, (0, 170, 30)),
|
| 154 |
+
_Label("Banner", 32, 32, "object", 8, False, False, (255, 220, 0)),
|
| 155 |
+
_Label("Bench", 33, 33, "object", 8, False, False, (255, 0, 0)),
|
| 156 |
+
_Label("Bike Rack", 34, 34, "object", 8, False, False, (255, 0, 0)),
|
| 157 |
+
_Label("Billboard", 35, 35, "object", 8, False, False, (255, 0, 0)),
|
| 158 |
+
_Label("Catch Basin", 36, 36, "object", 8, False, False, (255, 0, 0)),
|
| 159 |
+
_Label("CCTV Camera", 37, 37, "object", 8, False, False, (255, 0, 0)),
|
| 160 |
+
_Label("Fire Hydrant", 38, 38, "object", 8, False, False, (255, 0, 0)),
|
| 161 |
+
_Label("Junction Box", 39, 39, "object", 8, False, False, (255, 0, 0)),
|
| 162 |
+
_Label("Mailbox", 40, 40, "object", 8, False, False, (255, 0, 0)),
|
| 163 |
+
_Label("Manhole", 41, 41, "object", 8, False, False, (255, 0, 0)),
|
| 164 |
+
_Label("Phone Booth", 42, 42, "object", 8, False, False, (255, 0, 0)),
|
| 165 |
+
_Label("Pothole", 43, 43, "object", 8, False, False, (255, 0, 0)),
|
| 166 |
+
_Label("Street Light", 44, 44, "object", 8, False, False, (255, 0, 0)),
|
| 167 |
+
_Label("Pole", 45, 45, "object", 8, False, False, (255, 0, 0)),
|
| 168 |
+
_Label("Traffic Sign Frame", 46, 46, "object", 8, False, False, (255, 0, 0)),
|
| 169 |
+
_Label("Utility Pole", 47, 47, "object", 8, False, False, (255, 0, 0)),
|
| 170 |
+
_Label("Traffic Light", 48, 48, "object", 8, False, False, (255, 0, 0)),
|
| 171 |
+
_Label("Traffic Sign (Back)", 49, 49, "object", 8, False, False, (255, 0, 0)),
|
| 172 |
+
_Label("Traffic Sign (Front)", 50, 50, "object", 8, False, False, (255, 0, 0)),
|
| 173 |
+
_Label("Trash Can", 51, 51, "object", 8, False, False, (255, 0, 0)),
|
| 174 |
+
_Label("Bicycle", 52, 52, "vehicle", 9, True, False, (119, 11, 32)),
|
| 175 |
+
_Label("Boat", 53, 53, "vehicle", 9, False, False, (0, 0, 142)),
|
| 176 |
+
_Label("Bus", 54, 54, "vehicle", 9, True, False, (0, 60, 100)),
|
| 177 |
+
_Label("Car", 55, 55, "vehicle", 9, True, False, (0, 0, 142)),
|
| 178 |
+
_Label("Caravan", 56, 56, "vehicle", 9, True, False, (0, 0, 90)),
|
| 179 |
+
_Label("Motorcycle", 57, 57, "vehicle", 9, True, False, (0, 0, 230)),
|
| 180 |
+
_Label("On Rails", 58, 58, "vehicle", 9, False, False, (0, 80, 100)),
|
| 181 |
+
_Label("Other Vehicle", 59, 59, "vehicle", 9, True, False, (128, 64, 64)),
|
| 182 |
+
_Label("Trailer", 60, 60, "vehicle", 9, True, False, (0, 0, 110)),
|
| 183 |
+
_Label("Truck", 61, 61, "vehicle", 9, True, False, (0, 0, 70)),
|
| 184 |
+
_Label("Wheeled Slow", 62, 62, "vehicle", 9, False, False, (0, 0, 192)),
|
| 185 |
+
_Label("Car Mount", 63, 63, "vehicle", 9, True, False, (32, 32, 32)),
|
| 186 |
+
_Label("Ego Vehicle", 64, 64, "vehicle", 9, True, False, (120, 10, 10)),
|
| 187 |
+
]
|
| 188 |
+
return labels
|
| 189 |
+
|
| 190 |
+
|
| 191 |
+
def _get_resized_dimensions(width: int, height: int, max_size: int = 2048) -> Tuple[int, int]:
|
| 192 |
+
"""Calculate the new dimensions of an image to maintain aspect ratio.
|
| 193 |
+
|
| 194 |
+
If both dimensions are less than or equal to max_size, the original dimensions are returned.
|
| 195 |
+
|
| 196 |
+
Args:
|
| 197 |
+
width (int): The original width of the image.
|
| 198 |
+
height (int): The original height of the image.
|
| 199 |
+
max_size (int, optional): The maximum size for either dimension. Defaults to 2048.
|
| 200 |
+
|
| 201 |
+
Returns:
|
| 202 |
+
Tuple[int, int]: The new dimensions (width, height) of the image.
|
| 203 |
+
"""
|
| 204 |
+
if max(width, height) > max_size:
|
| 205 |
+
scaling_factor = max_size / max(width, height)
|
| 206 |
+
new_width = int(width * scaling_factor)
|
| 207 |
+
new_height = int(height * scaling_factor)
|
| 208 |
+
return new_width, new_height
|
| 209 |
+
else:
|
| 210 |
+
# Return original dimensions if resizing is not necessary
|
| 211 |
+
return width, height
|
| 212 |
+
|
| 213 |
+
|
| 214 |
+
class ImageDataset(Dataset):
|
| 215 |
+
"""A dataset class for loading and processing images.
|
| 216 |
+
|
| 217 |
+
This class handles the loading of images from specified file paths,
|
| 218 |
+
resizing them to a maximum size while maintaining the aspect ratio,
|
| 219 |
+
and converting them to RGB format if required.
|
| 220 |
+
|
| 221 |
+
Args:
|
| 222 |
+
image_files (List[Path]): A list of paths to the image files.
|
| 223 |
+
max_size (int, optional): The maximum size for resizing the images. Defaults to 2048.
|
| 224 |
+
rgb (bool, optional): If True, images will be converted to RGB format. Defaults to True.
|
| 225 |
+
"""
|
| 226 |
+
|
| 227 |
+
def __init__(self, image_files: List[Path], max_size: int = 2048, rgb: bool = True) -> None:
|
| 228 |
+
"""Initializes the ImageDataset with the paths to images, maximum size for resizing,
|
| 229 |
+
and color mode.
|
| 230 |
+
|
| 231 |
+
Args:
|
| 232 |
+
image_files (List[Path]): A list of paths to the image files.
|
| 233 |
+
max_size (int, optional): The maximum size for resizing the images. Defaults to 2048.
|
| 234 |
+
rgb (bool, optional): If True, images will be converted to RGB format. Defaults to True.
|
| 235 |
+
"""
|
| 236 |
+
self.image_files = [
|
| 237 |
+
image_file
|
| 238 |
+
for image_file in image_files
|
| 239 |
+
if image_file.suffix.lower() in [".jpg", ".jpeg", ".png"] and not image_file.name.startswith(".")
|
| 240 |
+
]
|
| 241 |
+
self.max_size = max_size
|
| 242 |
+
self.rgb = rgb
|
| 243 |
+
|
| 244 |
+
def __len__(self) -> int:
|
| 245 |
+
"""Returns the number of images in the dataset.
|
| 246 |
+
|
| 247 |
+
Returns:
|
| 248 |
+
int: The number of images in the dataset.
|
| 249 |
+
"""
|
| 250 |
+
return len(self.image_files)
|
| 251 |
+
|
| 252 |
+
def __getitem__(self, idx: int) -> Tuple[str, cv2.Mat, Tuple[int, int]]:
|
| 253 |
+
"""Retrieves an image and its metadata from the dataset.
|
| 254 |
+
|
| 255 |
+
Args:
|
| 256 |
+
idx (int): The index of the image to retrieve.
|
| 257 |
+
|
| 258 |
+
Returns:
|
| 259 |
+
Tuple[str, cv2.Mat, Tuple[int, int]]: A tuple containing the image file path,
|
| 260 |
+
the image data, and the dimensions of the image (height, width).
|
| 261 |
+
|
| 262 |
+
Raises:
|
| 263 |
+
ValueError: If the image cannot be read.
|
| 264 |
+
"""
|
| 265 |
+
image_file = self.image_files[idx]
|
| 266 |
+
img = cv2.imread(str(image_file))
|
| 267 |
+
|
| 268 |
+
if img is None:
|
| 269 |
+
raise ValueError(f"Unable to read image at {image_file}")
|
| 270 |
+
|
| 271 |
+
original_height, original_width = img.shape[:2]
|
| 272 |
+
new_width, new_height = _get_resized_dimensions(original_width, original_height, self.max_size)
|
| 273 |
+
|
| 274 |
+
# Resize image if necessary
|
| 275 |
+
if (original_width, original_height) != (new_width, new_height):
|
| 276 |
+
img = cv2.resize(img, (new_width, new_height))
|
| 277 |
+
|
| 278 |
+
if self.rgb:
|
| 279 |
+
img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
|
| 280 |
+
|
| 281 |
+
return str(image_file), img, (new_height, new_width)
|
| 282 |
+
|
| 283 |
+
def collate_fn(
|
| 284 |
+
self, data: List[Tuple[str, cv2.Mat, Tuple[int, int]]]
|
| 285 |
+
) -> Tuple[List[str], List[cv2.Mat], List[Tuple[int, int]]]:
|
| 286 |
+
"""Custom collate function for the dataset.
|
| 287 |
+
|
| 288 |
+
Args:
|
| 289 |
+
data (List[Tuple[str, cv2.Mat, Tuple[int, int]]]): A list of tuples containing
|
| 290 |
+
image file path, image data, and original image dimensions.
|
| 291 |
+
|
| 292 |
+
Returns:
|
| 293 |
+
Tuple[List[str], List[cv2.Mat], List[Tuple[int, int]]]: A tuple containing lists
|
| 294 |
+
of image file paths, image data, and original image dimensions.
|
| 295 |
+
"""
|
| 296 |
+
image_files, images, original_img_shape = zip(*data)
|
| 297 |
+
return list(image_files), list(images), list(original_img_shape)
|
| 298 |
+
|
| 299 |
+
|
| 300 |
+
class Segmenter:
|
| 301 |
+
"""A class for performing semantic and panoptic segmentation on images.
|
| 302 |
+
|
| 303 |
+
The models used are from the Mask2Former (https://huggingface.co/docs/transformers/model_doc/mask2former).
|
| 304 |
+
|
| 305 |
+
Attributes:
|
| 306 |
+
device (str): The device to run the model on (e.g., "cuda" or "cpu").
|
| 307 |
+
dataset (str): The name of the dataset (e.g., "cityscapes" or "mapillary").
|
| 308 |
+
task (str): The type of segmentation task (e.g., "semantic" or "panoptic").
|
| 309 |
+
model_name (str): The name of the pre-trained model corresponding to the dataset and task.
|
| 310 |
+
model: The segmentation model.
|
| 311 |
+
processor: The image processor for the model.
|
| 312 |
+
color_map: A mapping of class IDs to colors.
|
| 313 |
+
label_map: A mapping of class IDs to labels.
|
| 314 |
+
id_to_name_map: A mapping of label IDs to label names.
|
| 315 |
+
verbosity (int): Level of verbosity for progress bars (0=no progress, 1=outer loops only, 2=all loops)
|
| 316 |
+
|
| 317 |
+
Args:
|
| 318 |
+
dataset (str): The name of the dataset (default is "cityscapes").
|
| 319 |
+
task (str): The type of task (default is "semantic").
|
| 320 |
+
device (str, optional): The device to run the model on (e.g., "cuda" or "cpu"). If None, the default device will be used.
|
| 321 |
+
verbosity (int, optional): Level of verbosity for progress bars (0=no progress, 1=outer loops only, 2=all loops). Default is 1.
|
| 322 |
+
|
| 323 |
+
Returns:
|
| 324 |
+
None
|
| 325 |
+
"""
|
| 326 |
+
|
| 327 |
+
def __init__(
|
| 328 |
+
self, dataset: str = "cityscapes", task: str = "semantic", device: Optional[str] = None, verbosity: int = 1
|
| 329 |
+
) -> None:
|
| 330 |
+
"""Initializes the Segmenter with a model and dataset.
|
| 331 |
+
|
| 332 |
+
Args:
|
| 333 |
+
dataset (str): The name of the dataset (default is "cityscapes").
|
| 334 |
+
task (str): The type of task (default is "semantic").
|
| 335 |
+
device (str, optional): The device to run the model on (e.g., "cuda" or "cpu"). If None, the default device will be used.
|
| 336 |
+
verbosity (int, optional): Level of verbosity for progress bars (0=no progress, 1=outer loops only, 2=all loops). Default is 1.
|
| 337 |
+
|
| 338 |
+
Returns:
|
| 339 |
+
None
|
| 340 |
+
"""
|
| 341 |
+
self.device = self._get_device(device)
|
| 342 |
+
self.dataset = dataset
|
| 343 |
+
self.task = task
|
| 344 |
+
self.model_name = self._get_model_name(self.dataset, self.task)
|
| 345 |
+
self.model, self.processor = self._get_model_processor(self.model_name)
|
| 346 |
+
self.color_map = self._create_color_map(dataset)
|
| 347 |
+
self.label_map = self._create_label_map(dataset)
|
| 348 |
+
self.id_to_name_map = self._create_id_to_name_map(dataset)
|
| 349 |
+
self.verbosity = verbosity
|
| 350 |
+
|
| 351 |
+
def _get_model_name(self, dataset: str, task: str) -> str:
|
| 352 |
+
"""Get the model name based on the dataset and task.
|
| 353 |
+
|
| 354 |
+
Args:
|
| 355 |
+
dataset (str): The name of the dataset (e.g., "cityscapes", "mapillary").
|
| 356 |
+
task (str): The type of task (e.g., "semantic", "panoptic").
|
| 357 |
+
|
| 358 |
+
Returns:
|
| 359 |
+
str: The name of the pre-trained model corresponding to the dataset and task.
|
| 360 |
+
|
| 361 |
+
Raises:
|
| 362 |
+
ValueError: If the dataset is unknown.
|
| 363 |
+
|
| 364 |
+
"""
|
| 365 |
+
if dataset == "cityscapes":
|
| 366 |
+
if task == "semantic":
|
| 367 |
+
return "facebook/mask2former-swin-tiny-cityscapes-semantic"
|
| 368 |
+
elif task == "panoptic":
|
| 369 |
+
return "facebook/mask2former-swin-tiny-cityscapes-panoptic"
|
| 370 |
+
elif dataset == "mapillary":
|
| 371 |
+
if task == "semantic":
|
| 372 |
+
return "facebook/mask2former-swin-large-mapillary-vistas-semantic"
|
| 373 |
+
elif task == "panoptic":
|
| 374 |
+
return "facebook/mask2former-swin-large-mapillary-vistas-panoptic"
|
| 375 |
+
else:
|
| 376 |
+
raise ValueError(f"Unknown dataset: {dataset}")
|
| 377 |
+
|
| 378 |
+
def _get_model_processor(self, model_name: str) -> Tuple:
|
| 379 |
+
"""Get the model and processor for the given model name.
|
| 380 |
+
|
| 381 |
+
Args:
|
| 382 |
+
model_name(str): The name of the pre-trained model.
|
| 383 |
+
|
| 384 |
+
Returns:
|
| 385 |
+
Tuple: The model and processor.
|
| 386 |
+
|
| 387 |
+
"""
|
| 388 |
+
# Add other models in the future
|
| 389 |
+
if "mask2former" in model_name:
|
| 390 |
+
processor = AutoImageProcessor.from_pretrained(model_name)
|
| 391 |
+
model = Mask2FormerForUniversalSegmentation.from_pretrained(model_name).to(self.device)
|
| 392 |
+
return model, processor
|
| 393 |
+
|
| 394 |
+
def _create_color_map(self, dataset: str) -> np.ndarray:
|
| 395 |
+
"""Create a color map based on the given dataset."""
|
| 396 |
+
|
| 397 |
+
if dataset == "cityscapes":
|
| 398 |
+
labels = _create_cityscapes_label_colormap()
|
| 399 |
+
elif dataset == "mapillary":
|
| 400 |
+
labels = _create_mapillary_vistas_label_colormap()
|
| 401 |
+
else:
|
| 402 |
+
raise ValueError(f"Unknown dataset: {dataset}")
|
| 403 |
+
|
| 404 |
+
# Important:
|
| 405 |
+
# For Cityscapes, trainId=255 is the ignore label.
|
| 406 |
+
# It should not be treated as a normal semantic class.
|
| 407 |
+
valid_labels = [
|
| 408 |
+
label for label in labels
|
| 409 |
+
if label.trainId is not None and label.trainId >= 0 and label.trainId < 255
|
| 410 |
+
]
|
| 411 |
+
|
| 412 |
+
train_ids = np.array([label.trainId for label in valid_labels], dtype=np.int64)
|
| 413 |
+
colors = np.array([label.color for label in valid_labels], dtype=np.uint8)
|
| 414 |
+
|
| 415 |
+
if len(train_ids) == 0:
|
| 416 |
+
raise ValueError(
|
| 417 |
+
f"No valid trainIds found for dataset={dataset}. "
|
| 418 |
+
"Please check the label definitions."
|
| 419 |
+
)
|
| 420 |
+
|
| 421 |
+
max_train_id = int(np.max(train_ids)) + 1
|
| 422 |
+
color_map = np.zeros((max_train_id, 3), dtype=np.uint8)
|
| 423 |
+
color_map[train_ids] = colors
|
| 424 |
+
|
| 425 |
+
self.train_id_to_name = {
|
| 426 |
+
int(label.trainId): label.name for label in valid_labels
|
| 427 |
+
}
|
| 428 |
+
|
| 429 |
+
return color_map
|
| 430 |
+
|
| 431 |
+
def _create_label_map(self, dataset: str) -> Dict[Tuple, _Label]:
|
| 432 |
+
"""Create a label map based on the given dataset.
|
| 433 |
+
|
| 434 |
+
Args:
|
| 435 |
+
dataset(str): The name of the dataset.
|
| 436 |
+
|
| 437 |
+
Returns:
|
| 438 |
+
Dict[Tuple, _Label]: A dictionary mapping colors to labels.
|
| 439 |
+
|
| 440 |
+
"""
|
| 441 |
+
if dataset == "cityscapes":
|
| 442 |
+
labels = _create_cityscapes_label_colormap()
|
| 443 |
+
elif dataset == "mapillary":
|
| 444 |
+
labels = _create_mapillary_vistas_label_colormap()
|
| 445 |
+
else:
|
| 446 |
+
raise ValueError(f"Unknown dataset: {dataset}")
|
| 447 |
+
|
| 448 |
+
color_to_label = {}
|
| 449 |
+
for label in labels:
|
| 450 |
+
color = label.color
|
| 451 |
+
color_to_label[color] = label
|
| 452 |
+
|
| 453 |
+
return color_to_label
|
| 454 |
+
|
| 455 |
+
def _create_id_to_name_map(self, dataset: str) -> Dict[int, str]:
|
| 456 |
+
"""Create a mapping from train IDs to label names based on the dataset."""
|
| 457 |
+
|
| 458 |
+
if dataset == "cityscapes":
|
| 459 |
+
labels = _create_cityscapes_label_colormap()
|
| 460 |
+
elif dataset == "mapillary":
|
| 461 |
+
labels = _create_mapillary_vistas_label_colormap()
|
| 462 |
+
else:
|
| 463 |
+
raise ValueError(f"Unknown dataset: {dataset}")
|
| 464 |
+
|
| 465 |
+
valid_labels = [
|
| 466 |
+
label for label in labels
|
| 467 |
+
if label.trainId is not None and label.trainId >= 0 and label.trainId < 255
|
| 468 |
+
]
|
| 469 |
+
|
| 470 |
+
return {
|
| 471 |
+
int(label.trainId): label.name
|
| 472 |
+
for label in valid_labels
|
| 473 |
+
}
|
| 474 |
+
|
| 475 |
+
def _get_device(self, device: Optional[str]) -> torch.device:
|
| 476 |
+
"""Get the appropriate device for running the model.
|
| 477 |
+
|
| 478 |
+
Args:
|
| 479 |
+
device (str or None): The device to use (e.g., "cpu", "cuda", "mps"). If None, the function will select the best available device.
|
| 480 |
+
|
| 481 |
+
Returns:
|
| 482 |
+
torch.device: The device to use for running the model.
|
| 483 |
+
|
| 484 |
+
Raises:
|
| 485 |
+
ValueError: If the provided device is not recognized.
|
| 486 |
+
"""
|
| 487 |
+
if device is not None:
|
| 488 |
+
print(f"Using {device.upper()}")
|
| 489 |
+
return torch.device(device)
|
| 490 |
+
if torch.cuda.is_available():
|
| 491 |
+
print("Using GPU")
|
| 492 |
+
return torch.device("cuda")
|
| 493 |
+
else:
|
| 494 |
+
print("Using CPU")
|
| 495 |
+
return torch.device("cpu")
|
| 496 |
+
|
| 497 |
+
def _calculate_pixel_ratios(self, segmented_img: np.ndarray) -> Dict[str, float]:
|
| 498 |
+
"""Calculate pixel ratios for each class in the segmented image."""
|
| 499 |
+
|
| 500 |
+
unique, counts = np.unique(segmented_img, return_counts=True)
|
| 501 |
+
total_pixels = np.sum(counts)
|
| 502 |
+
|
| 503 |
+
pixel_ratios = {}
|
| 504 |
+
|
| 505 |
+
for train_id, count in zip(unique, counts):
|
| 506 |
+
train_id = int(train_id)
|
| 507 |
+
|
| 508 |
+
# Skip ignored or unknown labels
|
| 509 |
+
if train_id not in self.train_id_to_name:
|
| 510 |
+
continue
|
| 511 |
+
|
| 512 |
+
pixel_ratios[self.train_id_to_name[train_id]] = count / total_pixels
|
| 513 |
+
|
| 514 |
+
return pixel_ratios
|
| 515 |
+
|
| 516 |
+
def _save_as_csv(self, input_dict: dict, dir_output: Path, value_name: str, csv_format: str) -> None:
|
| 517 |
+
"""Save pixel ratios as a CSV file.
|
| 518 |
+
|
| 519 |
+
This function takes a dictionary of pixel ratios and saves it to a CSV file in either long or wide format.
|
| 520 |
+
|
| 521 |
+
Args:
|
| 522 |
+
input_dict (dict): A dictionary containing pixel ratios for each image and label.
|
| 523 |
+
dir_output (Path): The directory where the CSV file will be saved.
|
| 524 |
+
value_name (str): The name of the value to be saved in the CSV.
|
| 525 |
+
csv_format (str): The format of the CSV file, either 'long' or 'wide'.
|
| 526 |
+
|
| 527 |
+
Returns:
|
| 528 |
+
None: This function does not return any value but saves the CSV file to the specified directory.
|
| 529 |
+
"""
|
| 530 |
+
if csv_format == "long":
|
| 531 |
+
df_list = [
|
| 532 |
+
pd.DataFrame(
|
| 533 |
+
{
|
| 534 |
+
"filename_key": [filename_key],
|
| 535 |
+
"label_name": [key],
|
| 536 |
+
value_name: [value] if value is not None else [0],
|
| 537 |
+
}
|
| 538 |
+
)
|
| 539 |
+
for filename_key, inner_dict in input_dict.items()
|
| 540 |
+
for key, value in inner_dict.items()
|
| 541 |
+
]
|
| 542 |
+
|
| 543 |
+
pixel_ratios_df = pd.concat(df_list, ignore_index=True)
|
| 544 |
+
|
| 545 |
+
elif csv_format == "wide":
|
| 546 |
+
pixel_ratios_df = pd.DataFrame(input_dict).transpose().fillna(0)
|
| 547 |
+
pixel_ratios_df.index.names = ["filename_key"]
|
| 548 |
+
|
| 549 |
+
pixel_ratios_df.to_csv(dir_output / Path(value_name + ".csv"))
|
| 550 |
+
|
| 551 |
+
def _panoptic_segmentation(self, images: List[np.ndarray], original_img_shape: List[Tuple[int, int]]) -> list:
|
| 552 |
+
"""Perform panoptic segmentation on the given images.
|
| 553 |
+
|
| 554 |
+
Args:
|
| 555 |
+
images(list): List of input images.
|
| 556 |
+
original_img_shape(tuple): Original image shape.
|
| 557 |
+
|
| 558 |
+
Returns:
|
| 559 |
+
list: List of panoptic segmentation outputs.
|
| 560 |
+
|
| 561 |
+
"""
|
| 562 |
+
inputs = self.processor(images=images, return_tensors="pt").to(self.model.device)
|
| 563 |
+
outputs = self.model(**inputs)
|
| 564 |
+
return self.processor.post_process_panoptic_segmentation(
|
| 565 |
+
outputs, target_sizes=original_img_shape, label_ids_to_fuse=set([])
|
| 566 |
+
)
|
| 567 |
+
|
| 568 |
+
def _semantic_segmentation(self, images: List[np.ndarray], original_img_shape: List[Tuple[int, int]]) -> list:
|
| 569 |
+
"""Perform semantic segmentation on the given images.
|
| 570 |
+
|
| 571 |
+
Args:
|
| 572 |
+
images(list): List of input images.
|
| 573 |
+
original_img_shape(tuple): Original image shape.
|
| 574 |
+
|
| 575 |
+
Returns:
|
| 576 |
+
tuple: Tuple containing list of semantic segmentation outputs and list of pixel ratios.
|
| 577 |
+
|
| 578 |
+
"""
|
| 579 |
+
inputs = self.processor(images=images, return_tensors="pt").to(self.model.device)
|
| 580 |
+
with torch.no_grad():
|
| 581 |
+
outputs = self.model(**inputs)
|
| 582 |
+
segmentations = self.processor.post_process_semantic_segmentation(outputs, target_sizes=original_img_shape)
|
| 583 |
+
return segmentations
|
| 584 |
+
|
| 585 |
+
def _trainid_to_color(self, segmented_img: np.ndarray) -> np.ndarray:
|
| 586 |
+
"""Convert segmented image with train IDs to a colored image.
|
| 587 |
+
|
| 588 |
+
Args:
|
| 589 |
+
segmented_img(numpy.ndarray): Segmented image with train IDs.
|
| 590 |
+
|
| 591 |
+
Returns:
|
| 592 |
+
numpy.ndarray: Colored segmented image.
|
| 593 |
+
|
| 594 |
+
"""
|
| 595 |
+
colored_img = self.color_map[segmented_img]
|
| 596 |
+
return colored_img
|
| 597 |
+
|
| 598 |
+
def _save_panoptic_segmentation_image(
|
| 599 |
+
self, image_file: str, img: np.ndarray, dir_output: Path, output: dict
|
| 600 |
+
) -> None:
|
| 601 |
+
"""Save the panoptic segmentation image as a blended image with the original input image.
|
| 602 |
+
|
| 603 |
+
Args:
|
| 604 |
+
image_file (str): The input image file path.
|
| 605 |
+
img (np.ndarray): The input image in the format of a NumPy array.
|
| 606 |
+
dir_output (Path): The output directory path to save the blended image.
|
| 607 |
+
output (dict): The output dictionary containing the segmentation data.
|
| 608 |
+
|
| 609 |
+
Returns:
|
| 610 |
+
None: This function does not return any value but saves the blended image and segmented image to the specified directory.
|
| 611 |
+
"""
|
| 612 |
+
colored_segmented_img = self._trainid_to_color(output["label_segmentation"].cpu().numpy())
|
| 613 |
+
alpha = 0.5
|
| 614 |
+
blend_img = cv2.addWeighted(img, alpha, colored_segmented_img, 1 - alpha, 0)
|
| 615 |
+
|
| 616 |
+
# Calculate the scale factor for text size
|
| 617 |
+
height, width, _ = img.shape
|
| 618 |
+
scale_factor = np.sqrt(height * width) / 1000 # Example scale, adjust as needed
|
| 619 |
+
|
| 620 |
+
# Add annotations for each segment
|
| 621 |
+
for segment_info in output["segments_info"]:
|
| 622 |
+
segment_id = segment_info["id"]
|
| 623 |
+
label_id = segment_info["label_id"]
|
| 624 |
+
score = segment_info["score"]
|
| 625 |
+
|
| 626 |
+
# Use the label name instead of the label_id
|
| 627 |
+
label_name = self.id_to_name_map.get(label_id)
|
| 628 |
+
|
| 629 |
+
# Find the center of the segment for the label placement
|
| 630 |
+
y, x = np.where(output["segmentation"].cpu().numpy() == segment_id)
|
| 631 |
+
center_x, center_y = np.mean(x), np.mean(y)
|
| 632 |
+
|
| 633 |
+
# Add the annotation with dynamic font size
|
| 634 |
+
font_scale = 1 * scale_factor # Adjust base font size (1 here) as needed
|
| 635 |
+
thickness = 1 * scale_factor # Adjust base thickness (1 here) as needed
|
| 636 |
+
cv2.putText(
|
| 637 |
+
blend_img,
|
| 638 |
+
f"{label_name}-{score:.2f}",
|
| 639 |
+
(int(center_x), int(center_y)),
|
| 640 |
+
cv2.FONT_HERSHEY_SIMPLEX,
|
| 641 |
+
font_scale,
|
| 642 |
+
(255, 255, 255),
|
| 643 |
+
ceil(thickness),
|
| 644 |
+
cv2.LINE_AA,
|
| 645 |
+
)
|
| 646 |
+
|
| 647 |
+
output_file = dir_output / Path(image_file).name
|
| 648 |
+
|
| 649 |
+
# Save images based on specified options
|
| 650 |
+
if "segmented_image" in self.save_image_options:
|
| 651 |
+
cv2.imwrite(
|
| 652 |
+
str(output_file.with_name(output_file.stem + "_colored_segmented.png")),
|
| 653 |
+
cv2.cvtColor(colored_segmented_img, cv2.COLOR_RGB2BGR),
|
| 654 |
+
)
|
| 655 |
+
if "blend_image" in self.save_image_options:
|
| 656 |
+
cv2.imwrite(
|
| 657 |
+
str(output_file.with_name(output_file.stem + "_blend.png")),
|
| 658 |
+
cv2.cvtColor(blend_img, cv2.COLOR_RGB2BGR),
|
| 659 |
+
)
|
| 660 |
+
|
| 661 |
+
def _save_semantic_segmentation_image(
|
| 662 |
+
self, image_file: str, img: np.ndarray, dir_output: Path, output: torch.Tensor
|
| 663 |
+
) -> None:
|
| 664 |
+
"""Saves the semantic segmentation image as a colored segmented image and/or a
|
| 665 |
+
blended image with the original input image.
|
| 666 |
+
|
| 667 |
+
Args:
|
| 668 |
+
image_file (str): The input image file path.
|
| 669 |
+
img (np.array): The input image in the format of a NumPy array.
|
| 670 |
+
dir_output (Path): The output directory path to save the colored segmented and/or blended image.
|
| 671 |
+
output (Tensor): The output tensor containing the semantic segmentation data.
|
| 672 |
+
|
| 673 |
+
Returns:
|
| 674 |
+
None
|
| 675 |
+
"""
|
| 676 |
+
colored_segmented_img = self._trainid_to_color(output.cpu().numpy())
|
| 677 |
+
alpha = 0.5
|
| 678 |
+
blend_img = cv2.addWeighted(img, alpha, colored_segmented_img, 1 - alpha, 0)
|
| 679 |
+
|
| 680 |
+
output_file = dir_output / Path(image_file).name
|
| 681 |
+
|
| 682 |
+
# Save images based on specified options
|
| 683 |
+
if "segmented_image" in self.save_image_options:
|
| 684 |
+
cv2.imwrite(
|
| 685 |
+
str(output_file.with_name(output_file.stem + "_colored_segmented.png")),
|
| 686 |
+
cv2.cvtColor(colored_segmented_img, cv2.COLOR_RGB2BGR),
|
| 687 |
+
)
|
| 688 |
+
if "blend_image" in self.save_image_options:
|
| 689 |
+
cv2.imwrite(
|
| 690 |
+
str(output_file.with_name(output_file.stem + "_blend.png")),
|
| 691 |
+
cv2.cvtColor(blend_img, cv2.COLOR_RGB2BGR),
|
| 692 |
+
)
|
| 693 |
+
|
| 694 |
+
def _panoptic_count_labels(self, output: dict) -> Dict[str, int]:
|
| 695 |
+
"""Count the occurrences of each label in the panoptic segmentation output.
|
| 696 |
+
|
| 697 |
+
Args:
|
| 698 |
+
output (dict): The output dictionary containing segmentation information.
|
| 699 |
+
It should have a key "segments_info" which is a list of dictionaries,
|
| 700 |
+
each containing a "label_id".
|
| 701 |
+
|
| 702 |
+
Returns:
|
| 703 |
+
dict: A dictionary where keys are label names and values are the counts
|
| 704 |
+
of each label in the segmentation output.
|
| 705 |
+
"""
|
| 706 |
+
label_counts = {}
|
| 707 |
+
|
| 708 |
+
# Loop through each segment in the image
|
| 709 |
+
segments_info_list = output["segments_info"]
|
| 710 |
+
for segments_info in segments_info_list:
|
| 711 |
+
# Convert label_id to label_name
|
| 712 |
+
label_name = self.id_to_name_map.get(segments_info["label_id"])
|
| 713 |
+
# Increment the count for the name in label_counts
|
| 714 |
+
if label_name in label_counts:
|
| 715 |
+
label_counts[label_name] += 1
|
| 716 |
+
else:
|
| 717 |
+
label_counts[label_name] = 1
|
| 718 |
+
return label_counts
|
| 719 |
+
|
| 720 |
+
def _panoptic_segment_to_label(self, output: dict) -> torch.Tensor:
|
| 721 |
+
"""This function converts the output of post_process_panoptic_segmentation
|
| 722 |
+
function from segment_id to label_id.
|
| 723 |
+
|
| 724 |
+
Args:
|
| 725 |
+
output: The output dictionary from the
|
| 726 |
+
post_process_panoptic_segmentation function
|
| 727 |
+
|
| 728 |
+
Returns:
|
| 729 |
+
: segmentation with label_ids instead of segment_ids
|
| 730 |
+
|
| 731 |
+
"""
|
| 732 |
+
# Extract the segmentation and segments_info from the output
|
| 733 |
+
segmentation = output["segmentation"]
|
| 734 |
+
segments_info = output["segments_info"]
|
| 735 |
+
|
| 736 |
+
# Create a mapping from segment_id to label_id
|
| 737 |
+
id_map = {segment["id"]: segment["label_id"] for segment in segments_info}
|
| 738 |
+
|
| 739 |
+
# Use the map to convert the segmentation tensor from segment_ids to label_ids
|
| 740 |
+
new_segmentation = segmentation.clone()
|
| 741 |
+
|
| 742 |
+
for seg_id, label_id in id_map.items():
|
| 743 |
+
new_segmentation[segmentation == seg_id] = label_id
|
| 744 |
+
|
| 745 |
+
return new_segmentation
|
| 746 |
+
|
| 747 |
+
def _process_images(
|
| 748 |
+
self,
|
| 749 |
+
task: str,
|
| 750 |
+
image_files: List[str],
|
| 751 |
+
images: List[np.ndarray],
|
| 752 |
+
dir_output: Optional[Path],
|
| 753 |
+
pixel_ratio_dict: Dict[str, Dict[str, float]],
|
| 754 |
+
original_img_shape: List[Tuple[int, int]],
|
| 755 |
+
panoptic_dict: Optional[Dict[str, Dict[str, int]]] = None,
|
| 756 |
+
) -> None:
|
| 757 |
+
"""Process the input images for segmentation and save the output images.
|
| 758 |
+
|
| 759 |
+
Args:
|
| 760 |
+
task(str): The segmentation task to perform, either "panoptic" or "semantic".
|
| 761 |
+
image_files(List[str]): The list of file paths of the input images.
|
| 762 |
+
images(List[ndarray]): The list of input images in the form of numpy arrays.
|
| 763 |
+
dir_output(Path): The output directory where the segmented images will be saved.
|
| 764 |
+
pixel_ratio_dict(defaultdict): A dictionary to store the pixel ratios of the segmented images.
|
| 765 |
+
original_img_shape(List[Tuple[int): The original shapes of the input images.
|
| 766 |
+
panoptic_dict: (Default value = None)
|
| 767 |
+
|
| 768 |
+
Returns:
|
| 769 |
+
: None
|
| 770 |
+
|
| 771 |
+
"""
|
| 772 |
+
outputs = None
|
| 773 |
+
if task == "panoptic":
|
| 774 |
+
outputs = self._panoptic_segmentation(images, original_img_shape)
|
| 775 |
+
if outputs is not None:
|
| 776 |
+
for image_file, img, output in zip(image_files, images, outputs):
|
| 777 |
+
# create a new segmentation with label_ids instead of segment_ids
|
| 778 |
+
output["label_segmentation"] = self._panoptic_segment_to_label(output)
|
| 779 |
+
if (len(self.save_image_options) > 0) & (dir_output is not None):
|
| 780 |
+
self._save_panoptic_segmentation_image(image_file, img, dir_output, output)
|
| 781 |
+
pixel_ratio = self._calculate_pixel_ratios(output["label_segmentation"].cpu().numpy())
|
| 782 |
+
label_counts = self._panoptic_count_labels(output)
|
| 783 |
+
image_file_key = Path(image_file).stem
|
| 784 |
+
pixel_ratio_dict[image_file_key] = pixel_ratio
|
| 785 |
+
panoptic_dict[image_file_key] = label_counts
|
| 786 |
+
|
| 787 |
+
elif task == "semantic":
|
| 788 |
+
segmentations = self._semantic_segmentation(images, original_img_shape)
|
| 789 |
+
if segmentations is not None:
|
| 790 |
+
for image_file, img, segmentation in zip(image_files, images, segmentations):
|
| 791 |
+
if (len(self.save_image_options) > 0) & (dir_output is not None):
|
| 792 |
+
self._save_semantic_segmentation_image(image_file, img, dir_output, segmentation)
|
| 793 |
+
pixel_ratio = self._calculate_pixel_ratios(segmentation.cpu().numpy())
|
| 794 |
+
image_file_key = Path(image_file).stem
|
| 795 |
+
pixel_ratio_dict[image_file_key] = pixel_ratio
|
| 796 |
+
|
| 797 |
+
# Modify the segment method inside the Segmenter class
|
| 798 |
+
def segment(
|
| 799 |
+
self,
|
| 800 |
+
dir_input: Union[str, Path],
|
| 801 |
+
dir_image_output: Union[str, Path, None] = None,
|
| 802 |
+
dir_summary_output: Union[str, Path, None] = None,
|
| 803 |
+
batch_size: int = 1,
|
| 804 |
+
save_image_options: str = "segmented_image blend_image",
|
| 805 |
+
save_format: str = "json csv",
|
| 806 |
+
csv_format: str = "long", # "long" or "wide"
|
| 807 |
+
max_workers: Optional[int] = None,
|
| 808 |
+
) -> None:
|
| 809 |
+
"""Processes a batch of images for segmentation, saves the segmented images and
|
| 810 |
+
summary statistics.
|
| 811 |
+
|
| 812 |
+
This method handles the processing of images for segmentation, managing input/output directories,
|
| 813 |
+
saving options, and parallel processing settings. The method requires specifying an input directory
|
| 814 |
+
or a path to a single image and supports optional saving of output images and segmentation summaries.
|
| 815 |
+
|
| 816 |
+
Args:
|
| 817 |
+
dir_input: Input directory or path to a single image file
|
| 818 |
+
dir_image_output: Output directory where segmented images are saved
|
| 819 |
+
dir_summary_output: Output directory where segmentation summary files are saved
|
| 820 |
+
batch_size: Batch size for processing images (Default: 1)
|
| 821 |
+
save_image_options: Options for saving images ("segmented_image blend_image")
|
| 822 |
+
save_format: Format for saving summary files ("json csv")
|
| 823 |
+
csv_format: Format for CSV summary files ("long" or "wide")
|
| 824 |
+
max_workers: Maximum number of workers for parallel processing
|
| 825 |
+
|
| 826 |
+
Returns:
|
| 827 |
+
None: The method does not return any value but saves the processed results to specified directories.
|
| 828 |
+
|
| 829 |
+
Raises:
|
| 830 |
+
ValueError: If neither dir_image_output nor dir_summary_output is provided
|
| 831 |
+
ValueError: If the input path is neither a file nor a directory
|
| 832 |
+
"""
|
| 833 |
+
# make sure that at least one of dir_image_output and dir_summary_output is not None
|
| 834 |
+
if (dir_image_output is None) & (dir_summary_output is None):
|
| 835 |
+
raise ValueError("At least one of dir_image_output and dir_summary_output must not be None.")
|
| 836 |
+
|
| 837 |
+
# skip if there's pixel_ratio.json and/or pixel_ratios.csv in dir_summary_output, depending on save_format
|
| 838 |
+
if dir_summary_output is not None:
|
| 839 |
+
if "json" in save_format and "csv" in save_format:
|
| 840 |
+
if (Path(dir_summary_output) / "pixel_ratios.json").exists() and (
|
| 841 |
+
Path(dir_summary_output) / "pixel_ratios.csv"
|
| 842 |
+
).exists():
|
| 843 |
+
print("Segmentation summary already exists. Skipping segmentation.")
|
| 844 |
+
return
|
| 845 |
+
elif "json" in save_format:
|
| 846 |
+
if (Path(dir_summary_output) / "pixel_ratios.json").exists():
|
| 847 |
+
print("Segmentation summary already exists. Skipping segmentation.")
|
| 848 |
+
return
|
| 849 |
+
elif "csv" in save_format:
|
| 850 |
+
if (Path(dir_summary_output) / "pixel_ratios.csv").exists():
|
| 851 |
+
print("Segmentation summary already exists. Skipping segmentation.")
|
| 852 |
+
return
|
| 853 |
+
# save_image_options as a property of the class
|
| 854 |
+
self.save_image_options = save_image_options
|
| 855 |
+
|
| 856 |
+
# make directory
|
| 857 |
+
dir_input = Path(dir_input)
|
| 858 |
+
|
| 859 |
+
# initialize completed_image_files
|
| 860 |
+
completed_image_files = set()
|
| 861 |
+
if dir_image_output is not None:
|
| 862 |
+
dir_image_output = Path(dir_image_output)
|
| 863 |
+
dir_image_output.mkdir(parents=True, exist_ok=True)
|
| 864 |
+
# get a list of .png files and _blend.png files in the output directory and get the file names as a set
|
| 865 |
+
completed_image_files.update(
|
| 866 |
+
[
|
| 867 |
+
str(Path(f).stem).replace("_blend", "").replace("_colored_segmented", "")
|
| 868 |
+
for f in dir_image_output.glob("*.png")
|
| 869 |
+
]
|
| 870 |
+
)
|
| 871 |
+
|
| 872 |
+
if dir_summary_output is not None:
|
| 873 |
+
dir_summary_output = Path(dir_summary_output)
|
| 874 |
+
dir_summary_output.mkdir(parents=True, exist_ok=True)
|
| 875 |
+
# Create a new directory called "pixel_ratio_checkpoints"
|
| 876 |
+
dir_cache_segmentation_summary = dir_summary_output / "pixel_ratio_checkpoints"
|
| 877 |
+
dir_cache_segmentation_summary.mkdir(parents=True, exist_ok=True)
|
| 878 |
+
|
| 879 |
+
# Load all the checkpoint json files
|
| 880 |
+
checkpoints = glob.glob(str(dir_cache_segmentation_summary / "*.json"))
|
| 881 |
+
checkpoint_start_index = len(checkpoints)
|
| 882 |
+
|
| 883 |
+
if checkpoint_start_index > 0:
|
| 884 |
+
for checkpoint in checkpoints:
|
| 885 |
+
with open(checkpoint, "r") as f:
|
| 886 |
+
checkpoint_dict = json.load(f)
|
| 887 |
+
completed_image_files.update(checkpoint_dict.keys())
|
| 888 |
+
|
| 889 |
+
# also check pixel_ratios.json in dir_cache_segmentation_summary
|
| 890 |
+
if (dir_cache_segmentation_summary / "pixel_ratios.json").exists():
|
| 891 |
+
with open(dir_cache_segmentation_summary / "pixel_ratios.json", "r") as f:
|
| 892 |
+
pixel_ratio_dict = json.load(f)
|
| 893 |
+
completed_image_files.update(pixel_ratio_dict.keys())
|
| 894 |
+
|
| 895 |
+
# Get the list of all image files and filter the ones that are not completed yet
|
| 896 |
+
# Handle both single file and directory inputs
|
| 897 |
+
if dir_input.is_file():
|
| 898 |
+
# Process as a single file
|
| 899 |
+
image_file_list = [dir_input]
|
| 900 |
+
elif dir_input.is_dir():
|
| 901 |
+
# Process all suitable files in the directory
|
| 902 |
+
image_extensions = [
|
| 903 |
+
".jpg",
|
| 904 |
+
".jpeg",
|
| 905 |
+
".png",
|
| 906 |
+
".tif",
|
| 907 |
+
".tiff",
|
| 908 |
+
".bmp",
|
| 909 |
+
".dib",
|
| 910 |
+
".pbm",
|
| 911 |
+
".pgm",
|
| 912 |
+
".ppm",
|
| 913 |
+
".sr",
|
| 914 |
+
".ras",
|
| 915 |
+
".exr",
|
| 916 |
+
".jp2",
|
| 917 |
+
]
|
| 918 |
+
# Get the list of all image files in the directory that are not completed yet
|
| 919 |
+
image_file_list = [
|
| 920 |
+
f
|
| 921 |
+
for f in Path(dir_input).iterdir()
|
| 922 |
+
if f.suffix in image_extensions and f.stem not in completed_image_files
|
| 923 |
+
]
|
| 924 |
+
else:
|
| 925 |
+
raise ValueError("dir_input must be either a file or a directory.")
|
| 926 |
+
|
| 927 |
+
# skip if there are no image files to process
|
| 928 |
+
if len(image_file_list) == 0:
|
| 929 |
+
print("No image files to process. Skipping segmentation.")
|
| 930 |
+
return
|
| 931 |
+
|
| 932 |
+
outer_batch_size = 1000 # Number of inner batches in one outer batch
|
| 933 |
+
num_outer_batches = (len(image_file_list) + outer_batch_size * batch_size - 1) // (
|
| 934 |
+
outer_batch_size * batch_size
|
| 935 |
+
)
|
| 936 |
+
|
| 937 |
+
for i in verbosity_tqdm(
|
| 938 |
+
range(num_outer_batches),
|
| 939 |
+
desc=f"Processing outer batches of size {min(outer_batch_size * batch_size, len(image_file_list))}",
|
| 940 |
+
verbosity=self.verbosity,
|
| 941 |
+
level=1,
|
| 942 |
+
):
|
| 943 |
+
# Get the image files for the current outer batch
|
| 944 |
+
outer_batch_image_file_list = image_file_list[
|
| 945 |
+
i * outer_batch_size * batch_size : (i + 1) * outer_batch_size * batch_size
|
| 946 |
+
]
|
| 947 |
+
|
| 948 |
+
dataset = ImageDataset(outer_batch_image_file_list)
|
| 949 |
+
dataloader = DataLoader(dataset, batch_size=batch_size, collate_fn=dataset.collate_fn)
|
| 950 |
+
|
| 951 |
+
# set up pixel_ratio_dict for the current outer batch
|
| 952 |
+
pixel_ratio_dict = defaultdict(dict) # reset pixel_ratio_dict for each outer batch
|
| 953 |
+
panoptic_dict = defaultdict(dict) # reset panoptic_dict for each outer batch
|
| 954 |
+
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
| 955 |
+
futures = []
|
| 956 |
+
|
| 957 |
+
for batch in dataloader:
|
| 958 |
+
image_files, images, original_img_shape = batch
|
| 959 |
+
if self.task == "panoptic":
|
| 960 |
+
future = executor.submit(
|
| 961 |
+
self._process_images,
|
| 962 |
+
self.task,
|
| 963 |
+
image_files,
|
| 964 |
+
images,
|
| 965 |
+
dir_image_output,
|
| 966 |
+
pixel_ratio_dict,
|
| 967 |
+
original_img_shape,
|
| 968 |
+
panoptic_dict,
|
| 969 |
+
)
|
| 970 |
+
elif self.task == "semantic":
|
| 971 |
+
future = executor.submit(
|
| 972 |
+
self._process_images,
|
| 973 |
+
self.task,
|
| 974 |
+
image_files,
|
| 975 |
+
images,
|
| 976 |
+
dir_image_output,
|
| 977 |
+
pixel_ratio_dict,
|
| 978 |
+
original_img_shape,
|
| 979 |
+
)
|
| 980 |
+
futures.append(future)
|
| 981 |
+
|
| 982 |
+
for completed_future in verbosity_tqdm(
|
| 983 |
+
as_completed(futures),
|
| 984 |
+
total=len(futures),
|
| 985 |
+
desc=f"Processing outer batch #{i+1}",
|
| 986 |
+
verbosity=self.verbosity,
|
| 987 |
+
level=2,
|
| 988 |
+
):
|
| 989 |
+
completed_future.result()
|
| 990 |
+
|
| 991 |
+
if dir_summary_output is not None:
|
| 992 |
+
# Save checkpoint for each outer batch
|
| 993 |
+
with open(
|
| 994 |
+
f"{dir_cache_segmentation_summary}/checkpoint_batch_{checkpoint_start_index+i+1}_pixel_ratio.json",
|
| 995 |
+
"w",
|
| 996 |
+
) as f:
|
| 997 |
+
json.dump(pixel_ratio_dict, f)
|
| 998 |
+
|
| 999 |
+
if self.task == "panoptic":
|
| 1000 |
+
with open(
|
| 1001 |
+
f"{dir_cache_segmentation_summary}/checkpoint_batch_{checkpoint_start_index+i+1}_panoptic.json",
|
| 1002 |
+
"w",
|
| 1003 |
+
) as f:
|
| 1004 |
+
json.dump(panoptic_dict, f)
|
| 1005 |
+
if dir_summary_output is not None:
|
| 1006 |
+
# Merge all checkpoints into a single pixel_ratio_dict
|
| 1007 |
+
pixel_ratio_dict = defaultdict(dict)
|
| 1008 |
+
for checkpoint in glob.glob(str(dir_cache_segmentation_summary / "*_pixel_ratio.json")):
|
| 1009 |
+
with open(checkpoint, "r") as f:
|
| 1010 |
+
checkpoint_dict = json.load(f)
|
| 1011 |
+
for key, value in checkpoint_dict.items():
|
| 1012 |
+
pixel_ratio_dict[key] = value
|
| 1013 |
+
|
| 1014 |
+
# Merge all checkpoints into a single panoptic_dict
|
| 1015 |
+
if self.task == "panoptic":
|
| 1016 |
+
panoptic_dict = defaultdict(dict)
|
| 1017 |
+
for checkpoint in glob.glob(str(dir_cache_segmentation_summary / "*_panoptic.json")):
|
| 1018 |
+
with open(checkpoint, "r") as f:
|
| 1019 |
+
checkpoint_dict = json.load(f)
|
| 1020 |
+
for key, value in checkpoint_dict.items():
|
| 1021 |
+
panoptic_dict[key] = value
|
| 1022 |
+
|
| 1023 |
+
# Merge existing pixel_ratios.json with the new pixel_ratio_dict
|
| 1024 |
+
if (dir_summary_output / "pixel_ratios.json").exists():
|
| 1025 |
+
with open(dir_summary_output / "pixel_ratios.json", "r") as f:
|
| 1026 |
+
existing_pixel_ratio_dict = json.load(f)
|
| 1027 |
+
for key, value in existing_pixel_ratio_dict.items():
|
| 1028 |
+
pixel_ratio_dict[key] = value
|
| 1029 |
+
|
| 1030 |
+
# Merge existing label_counts.json with the new panoptic_dict
|
| 1031 |
+
if self.task == "panoptic":
|
| 1032 |
+
if (dir_summary_output / "label_counts.json").exists():
|
| 1033 |
+
with open(dir_summary_output / "label_counts.json", "r") as f:
|
| 1034 |
+
existing_panoptic_dict = json.load(f)
|
| 1035 |
+
for key, value in existing_panoptic_dict.items():
|
| 1036 |
+
panoptic_dict[key] = value
|
| 1037 |
+
|
| 1038 |
+
# Save pixel_ratio_dict as a JSON or CSV file
|
| 1039 |
+
if "json" in save_format:
|
| 1040 |
+
with open(dir_summary_output / "pixel_ratios.json", "w") as f:
|
| 1041 |
+
json.dump(pixel_ratio_dict, f)
|
| 1042 |
+
if self.task == "panoptic":
|
| 1043 |
+
with open(dir_summary_output / "label_counts.json", "w") as f:
|
| 1044 |
+
json.dump(panoptic_dict, f)
|
| 1045 |
+
if "csv" in save_format:
|
| 1046 |
+
self._save_as_csv(pixel_ratio_dict, dir_summary_output, "pixel_ratios", csv_format)
|
| 1047 |
+
if self.task == "panoptic":
|
| 1048 |
+
self._save_as_csv(panoptic_dict, dir_summary_output, "label_counts", csv_format)
|
| 1049 |
+
|
| 1050 |
+
# Delete the "pixel_ratio_checkpoints" directory
|
| 1051 |
+
shutil.rmtree(dir_cache_segmentation_summary, ignore_errors=True)
|
| 1052 |
+
|
| 1053 |
+
def calculate_pixel_ratio_post_process(
|
| 1054 |
+
self, dir_input: Union[str, Path], dir_output: Union[str, Path], save_format: str = "json csv"
|
| 1055 |
+
) -> None:
|
| 1056 |
+
"""Calculates the pixel ratio of different classes present in the segmented
|
| 1057 |
+
images and saves the results in either JSON or CSV format.
|
| 1058 |
+
|
| 1059 |
+
Args:
|
| 1060 |
+
dir_input: A string or Path object representing the input directory containing the segmented images.
|
| 1061 |
+
dir_output: A string or Path object representing the output directory where the pixel ratio results will be saved.
|
| 1062 |
+
save_format: A list containing the file formats in which the results will be saved. The allowed file formats are "json" and "csv". The default value is "json csv".
|
| 1063 |
+
|
| 1064 |
+
Returns:
|
| 1065 |
+
: None
|
| 1066 |
+
|
| 1067 |
+
"""
|
| 1068 |
+
|
| 1069 |
+
def calculate_label_ratios(image, label_map):
|
| 1070 |
+
"""Calculates the pixel ratio of different classes present in a single
|
| 1071 |
+
image.
|
| 1072 |
+
|
| 1073 |
+
Args:
|
| 1074 |
+
image: A numpy array representing an image.
|
| 1075 |
+
label_map: A dictionary containing the label names and their respective RGB colors.
|
| 1076 |
+
|
| 1077 |
+
Returns:
|
| 1078 |
+
: A dictionary containing the pixel ratio of different classes in the given image.
|
| 1079 |
+
|
| 1080 |
+
"""
|
| 1081 |
+
label_ratios = {}
|
| 1082 |
+
valid_pixels = 0
|
| 1083 |
+
|
| 1084 |
+
# First pass: count valid pixels that match colors in the label map
|
| 1085 |
+
for color, label in label_map.items():
|
| 1086 |
+
color_pixels = np.count_nonzero(np.all(image == color, axis=-1))
|
| 1087 |
+
valid_pixels += color_pixels
|
| 1088 |
+
label_ratios[label.name] = color_pixels
|
| 1089 |
+
|
| 1090 |
+
# Second pass: normalize by total valid pixels
|
| 1091 |
+
if valid_pixels > 0: # Avoid division by zero
|
| 1092 |
+
for label_name in label_ratios:
|
| 1093 |
+
label_ratios[label_name] = label_ratios[label_name] / valid_pixels
|
| 1094 |
+
|
| 1095 |
+
return label_ratios
|
| 1096 |
+
|
| 1097 |
+
def process_image_file(image_file, label_map):
|
| 1098 |
+
"""Calculates the pixel ratio of different classes in a single segmented
|
| 1099 |
+
image file.
|
| 1100 |
+
|
| 1101 |
+
Args:
|
| 1102 |
+
image_file: A Path object representing the segmented image file.
|
| 1103 |
+
label_map: A dictionary containing the label names and their respective RGB colors.
|
| 1104 |
+
|
| 1105 |
+
Returns:
|
| 1106 |
+
: A tuple containing the image file key and the pixel ratio of different classes in the given image.
|
| 1107 |
+
|
| 1108 |
+
"""
|
| 1109 |
+
image_file_key = str(Path(image_file).stem).replace("_colored_segmented", "")
|
| 1110 |
+
image = cv2.imread(str(image_file))
|
| 1111 |
+
image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)
|
| 1112 |
+
label_ratios = calculate_label_ratios(image, label_map)
|
| 1113 |
+
return image_file_key, label_ratios
|
| 1114 |
+
|
| 1115 |
+
def results_to_dataframe(results):
|
| 1116 |
+
"""Converts the results obtained from processing each image file into a
|
| 1117 |
+
Pandas DataFrame.
|
| 1118 |
+
|
| 1119 |
+
Args:
|
| 1120 |
+
results: A list of tuples, where each tuple contains the image file key and the pixel ratio of different classes in the corresponding image.
|
| 1121 |
+
|
| 1122 |
+
Returns:
|
| 1123 |
+
: A Pandas DataFrame containing the pixel ratios of different classes in each image file.
|
| 1124 |
+
|
| 1125 |
+
"""
|
| 1126 |
+
pixel_ratio_dict = {}
|
| 1127 |
+
|
| 1128 |
+
for image_file_key, label_ratios in results:
|
| 1129 |
+
pixel_ratio_dict[str(image_file_key)] = label_ratios
|
| 1130 |
+
|
| 1131 |
+
pixel_ratios_df = pd.DataFrame(pixel_ratio_dict).transpose()
|
| 1132 |
+
pixel_ratios_df.fillna(0, inplace=True)
|
| 1133 |
+
pixel_ratios_df.index.names = ["filename_key"]
|
| 1134 |
+
|
| 1135 |
+
return pixel_ratios_df
|
| 1136 |
+
|
| 1137 |
+
def results_to_nested_dict(results):
|
| 1138 |
+
"""Converts the results obtained from processing each image file into a
|
| 1139 |
+
nested dictionary.
|
| 1140 |
+
|
| 1141 |
+
Args:
|
| 1142 |
+
results: A list of tuples, where each tuple contains the image file key and the pixel ratio of different classes in the corresponding image.
|
| 1143 |
+
|
| 1144 |
+
Returns:
|
| 1145 |
+
: A nested dictionary containing the pixel ratios of different classes in each image file.
|
| 1146 |
+
|
| 1147 |
+
"""
|
| 1148 |
+
data = {}
|
| 1149 |
+
|
| 1150 |
+
for image_file_key, label_ratios in results:
|
| 1151 |
+
image_file_key = str(image_file_key)
|
| 1152 |
+
data[image_file_key] = label_ratios
|
| 1153 |
+
|
| 1154 |
+
return data
|
| 1155 |
+
|
| 1156 |
+
# create dir_output
|
| 1157 |
+
dir_output = Path(dir_output)
|
| 1158 |
+
dir_output.mkdir(parents=True, exist_ok=True)
|
| 1159 |
+
|
| 1160 |
+
# get files
|
| 1161 |
+
if isinstance(dir_input, str):
|
| 1162 |
+
dir_input = Path(dir_input)
|
| 1163 |
+
|
| 1164 |
+
# Set image file extensions
|
| 1165 |
+
image_extensions = [".jpg", ".png"]
|
| 1166 |
+
|
| 1167 |
+
if dir_input.is_file():
|
| 1168 |
+
image_files = [dir_input]
|
| 1169 |
+
elif dir_input.is_dir():
|
| 1170 |
+
image_files = [
|
| 1171 |
+
file
|
| 1172 |
+
for file in dir_input.rglob("*")
|
| 1173 |
+
if file.suffix.lower() in image_extensions and "_colored_segmented" in file.stem
|
| 1174 |
+
]
|
| 1175 |
+
else:
|
| 1176 |
+
raise ValueError("dir_input must be either a file or a directory.")
|
| 1177 |
+
|
| 1178 |
+
results = thread_map(process_image_file, image_files, [self.label_map] * len(image_files))
|
| 1179 |
+
|
| 1180 |
+
if "json" in save_format:
|
| 1181 |
+
json_output_file = Path(dir_output) / "pixel_ratios.json"
|
| 1182 |
+
nested_dict = results_to_nested_dict(results)
|
| 1183 |
+
with open(json_output_file, "w") as f:
|
| 1184 |
+
json.dump(nested_dict, f, indent=2)
|
| 1185 |
+
|
| 1186 |
+
if "csv" in save_format:
|
| 1187 |
+
csv_output_file = Path(dir_output) / "pixel_ratios.csv"
|
| 1188 |
+
df = results_to_dataframe(results)
|
| 1189 |
+
df.to_csv(csv_output_file)
|