Initial Commit

.gitattributes

@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+confusion_matrix_heatmap.png filter=lfs diff=lfs merge=lfs -text
+training_and_validation_loss.png filter=lfs diff=lfs merge=lfs -text

classification_report.csv

@@ -0,0 +1,93 @@
+,precision,recall,f1-score,support
+Akashiwo,0.9839344262295082,0.9845800524934383,0.984257133486389,3048.0
+Alexandrium,0.8623853211009175,0.9485368314833501,0.9034118212397886,991.0
+Amylax_Gonyaulax_Protoceratium,0.9492753623188406,0.9424460431654677,0.9458483754512635,139.0
+Asterionellopsis,0.9869646182495344,0.9724770642201835,0.9796672828096118,545.0
+Asterionellopsis_chain,1.0,0.9512195121951219,0.975,41.0
+Asteromphalus,0.8548387096774194,0.6272189349112426,0.7235494880546075,169.0
+Bad_Beads,0.9607843137254902,0.6901408450704225,0.8032786885245902,71.0
+Bad_blurred,0.8244575936883629,0.8874734607218684,0.8548057259713702,471.0
+Bad_mixed_phyto,0.9060240963855422,0.8703703703703703,0.8878394332939787,432.0
+Bad_setae,0.9526686807653575,0.900952380952381,0.9260890846793931,2100.0
+Centric,0.867296918767507,0.8256666666666667,0.8459699453551912,3000.0
+Centric_fuzzy,0.9707536557930259,0.8612774451097804,0.9127445795875199,1002.0
+Ceratium_divaricatum,0.9333333333333333,0.9180327868852459,0.9256198347107438,183.0
+Ceratium_furca,0.9739276703111859,0.9546578730420445,0.9641965029142381,1213.0
+Ceratium_lineatum,0.9576446280991735,0.9778481012658228,0.9676409185803758,948.0
+Chaetoceros,0.9246442432082794,0.953,0.9386080105055811,3000.0
+Ciliate_cutoff,0.922077922077922,0.79182156133829,0.852,269.0
+Ciliate_large,0.9538461538461539,0.9253731343283582,0.9393939393939394,67.0
+Ciliate_large_2,0.9506172839506173,0.9166666666666666,0.9333333333333333,84.0
+Ciliate_other_morpho_1,0.9653979238754326,0.84375,0.900484131253362,992.0
+Clusterflagellate_morpho_1,0.9805238415043653,0.9844908968307485,0.9825033647375505,1483.0
+Clusterflagellate_morpho_2,0.9877300613496932,0.9415204678362573,0.9640718562874252,171.0
+Corethron,1.0,0.9841269841269841,0.992,63.0
+Cryptophyte,0.9435528500276702,0.9798850574712644,0.9613758105441218,1740.0
+Cylindrotheca_Nitzschia,0.893523600439078,0.96047197640118,0.9257890247369918,1695.0
+Detonula_Cerataulina_Lauderia,0.8522247482949009,0.8746666666666667,0.8632998848494818,3000.0
+Detritus,0.9809606231068801,0.9784203711696159,0.9796888504753674,2317.0
+Detritus_infection,0.9475758770201025,0.9860541427399507,0.9664321608040201,2438.0
+Dictyocha,0.9963319578175149,0.99496336996337,0.9956471935853379,2184.0
+Dinoflagellate_morpho_1,0.7985125084516566,0.8241451500348919,0.8111263736263736,1433.0
+Dinoflagellate_morpho_2,0.9071400702301989,0.9412955465587044,0.9239022451818001,2470.0
+Dinoflagellate_morpho_3,0.625,0.75,0.6818181818181818,40.0
+Dinophysis,0.9846526655896607,0.993480032599837,0.9890466531440162,1227.0
+Ditylum,0.9516129032258065,0.944,0.9477911646586346,125.0
+Entomoneis,0.9608006672226855,0.9913941480206541,0.9758576874205845,1162.0
+Eucampia,0.9702258726899384,0.945,0.9574468085106383,3000.0
+Euglenoid,0.9862719862719863,0.953941908713693,0.9698375870069605,2410.0
+Flagellate_morpho_1,0.9424412834932187,0.9496666666666667,0.946040179312635,3000.0
+Flagellate_morpho_2,0.84,0.6774193548387096,0.75,62.0
+Flagellate_morpho_3,0.9721242060691602,0.9183333333333333,0.9444634898868701,3000.0
+Flagellate_nano_1,0.8882978723404256,0.893048128342246,0.8906666666666667,187.0
+Flagellate_nano_2,0.9927360774818402,0.9624413145539906,0.9773539928486293,426.0
+Fragilariopsis,0.9509025270758122,0.878,0.912998266897747,3000.0
+Guinardia_Dactyliosolen,0.8515901060070671,0.8860294117647058,0.8684684684684685,544.0
+Gymnodinium,0.7918263090676884,0.850480109739369,0.8201058201058201,729.0
+Gyrodinium,0.9383561643835616,0.9319727891156463,0.9351535836177475,147.0
+Gyrosigma,0.9294117647058824,0.9186046511627907,0.9239766081871345,86.0
+Haptophyte_prymnesium,0.7619047619047619,0.32653061224489793,0.45714285714285713,49.0
+Hemiaulus,0.8,0.7272727272727273,0.7619047619047619,33.0
+Hemiselmis,0.9644385907145209,0.9763333333333334,0.9703495113466953,3000.0
+Heterocapsa_morpho_1,0.816793893129771,0.6948051948051948,0.7508771929824561,154.0
+Heterocapsa_morpho_2,0.9275668073136427,0.9172461752433936,0.9223776223776223,1438.0
+Heterosigma_akashiwo,1.0,0.9992307692307693,0.9996152366294728,1300.0
+Laboea,0.9606741573033708,0.9884393063583815,0.9743589743589743,173.0
+Leptocylindrus,0.9578947368421052,0.9567757009345794,0.9573348918760959,856.0
+Lingulodinium,0.918918918918919,0.8947368421052632,0.9066666666666666,38.0
+Margalefidinium,0.9805194805194806,0.9563333333333334,0.968275396557543,3000.0
+Mesodinium,0.9539078156312625,0.9585179218687072,0.9562073121735637,2483.0
+Nano_cluster,0.952513966480447,0.9827089337175793,0.9673758865248226,347.0
+Nano_p_white,0.9411559888579387,0.970208183776023,0.9554612937433722,2786.0
+Pennate_med,0.8663697104677061,0.9076666666666666,0.8865375223832004,3000.0
+Pennate_morpho_1,0.9230769230769231,0.9375,0.9302325581395349,64.0
+Pennate_short,0.8640776699029126,0.777292576419214,0.8183908045977012,458.0
+Pennate_wide,0.9682539682539683,0.8356164383561644,0.8970588235294118,73.0
+Peridinium,0.8304167992363983,0.87,0.8497476802865049,3000.0
+Phaeocystis,0.9540229885057471,0.9021739130434783,0.9273743016759777,92.0
+Pleurosigma,0.9289940828402367,0.8532608695652174,0.8895184135977338,184.0
+Polykrikos,0.8813559322033898,0.8524590163934426,0.8666666666666667,122.0
+Proboscia,1.0,0.984375,0.9921259842519685,64.0
+Prorocentrum_narrow,0.981619937694704,0.9810087173100872,0.981314232326378,3212.0
+Prorocentrum_wide,0.9893723015609432,0.993,0.991182831475628,3000.0
+Pseudo-nitzschia,0.9001547987616099,0.9773109243697479,0.9371474617244158,1190.0
+Pyramimonas,1.0,0.9795918367346939,0.9896907216494846,147.0
+Rhizosolenia,0.9807692307692307,0.9357798165137615,0.9577464788732394,218.0
+Scrippsiella,0.8831325301204819,0.826381059751973,0.8538147932440303,1774.0
+Skeleonema,0.9862542955326461,0.9930795847750865,0.9896551724137931,289.0
+Skeletonema,0.9431818181818182,0.9764705882352941,0.9595375722543352,170.0
+Spiky_pacman_circular,0.9485498108448928,0.9495077000757385,0.9490285137522079,3961.0
+Stombidinium_morpho_1,0.9649805447470817,0.9358490566037736,0.9501915708812261,265.0
+Strombidium_morpho_2,0.9074933687002652,0.972636815920398,0.9389365351629503,2814.0
+Thalassionema,0.9897959183673469,0.9831081081081081,0.9864406779661017,592.0
+Thalassiosira,0.9297534616683553,0.9176666666666666,0.9236705250796846,3000.0
+Tiarina,0.9946524064171123,0.9841269841269841,0.9893617021276596,189.0
+Tintinnid,0.9375,0.9090909090909091,0.9230769230769231,33.0
+Tontonia,0.9576271186440678,0.9262295081967213,0.9416666666666667,244.0
+Torodinium,0.957345971563981,0.957345971563981,0.957345971563981,211.0
+Tropidoneis,1.0,0.9736842105263158,0.9866666666666667,38.0
+Unknown_morpho_1,0.9419354838709677,0.9449838187702265,0.9434571890145396,309.0
+Vicicitus,0.9171974522292994,0.8888888888888888,0.9028213166144201,324.0
+accuracy,0.9357566093820745,0.9357566093820745,0.9357566093820745,0.9357566093820745
+macro avg,0.9306671128207721,0.9091301897801766,0.9177410565671057,101598.0
+weighted avg,0.9364833769144936,0.9357566093820745,0.9355939356677413,101598.0

confusion_matrix.csv

@@ -0,0 +1,90 @@
+,Akashiwo,Alexandrium,Amylax_Gonyaulax_Protoceratium,Asterionellopsis,Asterionellopsis_chain,Asteromphalus,Bad_Beads,Bad_blurred,Bad_mixed_phyto,Bad_setae,Centric,Centric_fuzzy,Ceratium_divaricatum,Ceratium_furca,Ceratium_lineatum,Chaetoceros,Ciliate_cutoff,Ciliate_large,Ciliate_large_2,Ciliate_other_morpho_1,Clusterflagellate_morpho_1,Clusterflagellate_morpho_2,Corethron,Cryptophyte,Cylindrotheca_Nitzschia,Detonula_Cerataulina_Lauderia,Detritus,Detritus_infection,Dictyocha,Dinoflagellate_morpho_1,Dinoflagellate_morpho_2,Dinoflagellate_morpho_3,Dinophysis,Ditylum,Entomoneis,Eucampia,Euglenoid,Flagellate_morpho_1,Flagellate_morpho_2,Flagellate_morpho_3,Flagellate_nano_1,Flagellate_nano_2,Fragilariopsis,Guinardia_Dactyliosolen,Gymnodinium,Gyrodinium,Gyrosigma,Haptophyte_prymnesium,Hemiaulus,Hemiselmis,Heterocapsa_morpho_1,Heterocapsa_morpho_2,Heterosigma_akashiwo,Laboea,Leptocylindrus,Lingulodinium,Margalefidinium,Mesodinium,Nano_cluster,Nano_p_white,Pennate_med,Pennate_morpho_1,Pennate_short,Pennate_wide,Peridinium,Phaeocystis,Pleurosigma,Polykrikos,Proboscia,Prorocentrum_narrow,Prorocentrum_wide,Pseudo-nitzschia,Pyramimonas,Rhizosolenia,Scrippsiella,Skeleonema,Skeletonema,Spiky_pacman_circular,Stombidinium_morpho_1,Strombidium_morpho_2,Thalassionema,Thalassiosira,Tiarina,Tintinnid,Tontonia,Torodinium,Tropidoneis,Unknown_morpho_1,Vicicitus
+Akashiwo,3001,10,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,1,0,2,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12,4,0,0,0,0,0,0,0,0,0,1,4,8,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0
+Alexandrium,1,940,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,2,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,30,0,0,0,0,0,0,0,0,0,0,0,2,1,0,0,0,0,0,0,9,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0
+Amylax_Gonyaulax_Protoceratium,0,5,131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+Asterionellopsis,0,0,0,530,0,0,0,0,1,0,0,0,0,0,0,5,0,0,0,0,0,0,0,0,0,0,5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,2,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0
+Asterionellopsis_chain,0,0,0,0,39,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+Asteromphalus,2,10,0,0,0,106,0,0,0,0,27,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,12
+Bad_Beads,0,0,0,0,0,0,49,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+Bad_blurred,0,0,0,0,0,0,0,418,0,39,3,0,0,0,0,3,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,0
+Bad_mixed_phyto,0,0,0,1,0,0,0,0,376,2,0,0,0,0,0,23,0,0,0,0,1,0,0,0,0,0,3,0,0,0,0,0,0,2,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,5,0,0,0,0,0,0,0,0,0,16,0,0,0,0,0,0,0
+Bad_setae,0,0,0,0,0,0,0,64,1,1892,1,0,0,0,0,6,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,129,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,0
+Centric,1,4,0,0,0,10,0,6,0,2,2477,0,0,0,0,5,1,0,0,0,0,0,0,0,0,339,4,0,0,20,3,1,2,0,2,0,0,10,0,15,0,0,0,0,9,0,0,0,0,0,1,0,0,0,0,0,11,2,0,1,0,0,1,0,30,0,0,0,0,0,0,0,0,0,14,0,0,2,0,8,0,16,0,0,0,0,0,0,3
+Centric_fuzzy,0,0,0,0,0,0,0,0,0,0,0,863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,1,0,0,0,0,0,0,0,11,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+Ceratium_divaricatum,1,0,0,0,0,0,0,0,0,0,0,0,168,13,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+Ceratium_furca,1,0,0,0,0,0,0,0,0,0,0,0,10,1158,37,0,2,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+Ceratium_lineatum,0,0,0,2,0,0,0,0,0,0,0,0,1,18,927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+Chaetoceros,0,0,0,1,0,0,0,1,11,2,4,0,0,0,0,2859,0,0,0,0,1,1,0,0,0,7,2,0,0,0,1,0,1,0,2,18,0,6,0,1,0,1,2,7,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,3,1,0,0,0,0,0,0,0,0,0,5,10,0,0,0,50,0,0,0,0,0,2,0
+Ciliate_cutoff,0,0,0,0,0,0,0,11,4,3,0,1,0,0,0,1,213,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,23,0,0,1,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,2,1,0,0,0,0,0,0,0,0,0
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label_names.json

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+{
+  "0": "Akashiwo",
+  "1": "Alexandrium",
+  "2": "Amylax_Gonyaulax_Protoceratium",
+  "3": "Asterionellopsis",
+  "4": "Asterionellopsis_chain",
+  "5": "Asteromphalus",
+  "6": "Bad_Beads",
+  "7": "Bad_blurred",
+  "8": "Bad_mixed_phyto",
+  "9": "Bad_setae",
+  "10": "Centric",
+  "11": "Centric_fuzzy",
+  "12": "Ceratium_divaricatum",
+  "13": "Ceratium_furca",
+  "14": "Ceratium_lineatum",
+  "15": "Chaetoceros",
+  "16": "Ciliate_cutoff",
+  "17": "Ciliate_large",
+  "18": "Ciliate_large_2",
+  "19": "Ciliate_other_morpho_1",
+  "20": "Clusterflagellate_morpho_1",
+  "21": "Clusterflagellate_morpho_2",
+  "22": "Corethron",
+  "23": "Cryptophyte",
+  "24": "Cylindrotheca_Nitzschia",
+  "25": "Detonula_Cerataulina_Lauderia",
+  "26": "Detritus",
+  "27": "Detritus_infection",
+  "28": "Dictyocha",
+  "29": "Dinoflagellate_morpho_1",
+  "30": "Dinoflagellate_morpho_2",
+  "31": "Dinoflagellate_morpho_3",
+  "32": "Dinophysis",
+  "33": "Ditylum",
+  "34": "Entomoneis",
+  "35": "Eucampia",
+  "36": "Euglenoid",
+  "37": "Flagellate_morpho_1",
+  "38": "Flagellate_morpho_2",
+  "39": "Flagellate_morpho_3",
+  "40": "Flagellate_nano_1",
+  "41": "Flagellate_nano_2",
+  "42": "Fragilariopsis",
+  "43": "Guinardia_Dactyliosolen",
+  "44": "Gymnodinium",
+  "45": "Gyrodinium",
+  "46": "Gyrosigma",
+  "47": "Haptophyte_prymnesium",
+  "48": "Hemiaulus",
+  "49": "Hemiselmis",
+  "50": "Heterocapsa_morpho_1",
+  "51": "Heterocapsa_morpho_2",
+  "52": "Heterosigma_akashiwo",
+  "53": "Laboea",
+  "54": "Leptocylindrus",
+  "55": "Lingulodinium",
+  "56": "Margalefidinium",
+  "57": "Mesodinium",
+  "58": "Nano_cluster",
+  "59": "Nano_p_white",
+  "60": "Pennate_med",
+  "61": "Pennate_morpho_1",
+  "62": "Pennate_short",
+  "63": "Pennate_wide",
+  "64": "Peridinium",
+  "65": "Phaeocystis",
+  "66": "Pleurosigma",
+  "67": "Polykrikos",
+  "68": "Proboscia",
+  "69": "Prorocentrum_narrow",
+  "70": "Prorocentrum_wide",
+  "71": "Pseudo-nitzschia",
+  "72": "Pyramimonas",
+  "73": "Rhizosolenia",
+  "74": "Scrippsiella",
+  "75": "Skeleonema",
+  "76": "Skeletonema",
+  "77": "Spiky_pacman_circular",
+  "78": "Stombidinium_morpho_1",
+  "79": "Strombidium_morpho_2",
+  "80": "Thalassionema",
+  "81": "Thalassiosira",
+  "82": "Tiarina",
+  "83": "Tintinnid",
+  "84": "Tontonia",
+  "85": "Torodinium",
+  "86": "Tropidoneis",
+  "87": "Unknown_morpho_1",
+  "88": "Vicicitus"
+}

model_best.pth

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+version https://git-lfs.github.com/spec/v1
+oid sha256:5e4ea762ceae4c1235284b955f0c9006f7e212ea0ab6b4d294d4179afeebef6c
+size 343567494

phytoViT/config.json

@@ -0,0 +1,207 @@
+{
+  "architectures": [
+    "ViTForImageClassification"
+  ],
+  "attention_probs_dropout_prob": 0.0,
+  "encoder_stride": 16,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.0,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "Akashiwo",
+    "1": "Alexandrium",
+    "2": "Amylax_Gonyaulax_Protoceratium",
+    "3": "Asterionellopsis",
+    "4": "Asterionellopsis_chain",
+    "5": "Asteromphalus",
+    "6": "Bad_Beads",
+    "7": "Bad_blurred",
+    "8": "Bad_mixed_phyto",
+    "9": "Bad_setae",
+    "10": "Centric",
+    "11": "Centric_fuzzy",
+    "12": "Ceratium_divaricatum",
+    "13": "Ceratium_furca",
+    "14": "Ceratium_lineatum",
+    "15": "Chaetoceros",
+    "16": "Ciliate_cutoff",
+    "17": "Ciliate_large",
+    "18": "Ciliate_large_2",
+    "19": "Ciliate_other_morpho_1",
+    "20": "Clusterflagellate_morpho_1",
+    "21": "Clusterflagellate_morpho_2",
+    "22": "Corethron",
+    "23": "Cryptophyte",
+    "24": "Cylindrotheca_Nitzschia",
+    "25": "Detonula_Cerataulina_Lauderia",
+    "26": "Detritus",
+    "27": "Detritus_infection",
+    "28": "Dictyocha",
+    "29": "Dinoflagellate_morpho_1",
+    "30": "Dinoflagellate_morpho_2",
+    "31": "Dinoflagellate_morpho_3",
+    "32": "Dinophysis",
+    "33": "Ditylum",
+    "34": "Entomoneis",
+    "35": "Eucampia",
+    "36": "Euglenoid",
+    "37": "Flagellate_morpho_1",
+    "38": "Flagellate_morpho_2",
+    "39": "Flagellate_morpho_3",
+    "40": "Flagellate_nano_1",
+    "41": "Flagellate_nano_2",
+    "42": "Fragilariopsis",
+    "43": "Guinardia_Dactyliosolen",
+    "44": "Gymnodinium",
+    "45": "Gyrodinium",
+    "46": "Gyrosigma",
+    "47": "Haptophyte_prymnesium",
+    "48": "Hemiaulus",
+    "49": "Hemiselmis",
+    "50": "Heterocapsa_morpho_1",
+    "51": "Heterocapsa_morpho_2",
+    "52": "Heterosigma_akashiwo",
+    "53": "Laboea",
+    "54": "Leptocylindrus",
+    "55": "Lingulodinium",
+    "56": "Margalefidinium",
+    "57": "Mesodinium",
+    "58": "Nano_cluster",
+    "59": "Nano_p_white",
+    "60": "Pennate_med",
+    "61": "Pennate_morpho_1",
+    "62": "Pennate_short",
+    "63": "Pennate_wide",
+    "64": "Peridinium",
+    "65": "Phaeocystis",
+    "66": "Pleurosigma",
+    "67": "Polykrikos",
+    "68": "Proboscia",
+    "69": "Prorocentrum_narrow",
+    "70": "Prorocentrum_wide",
+    "71": "Pseudo-nitzschia",
+    "72": "Pyramimonas",
+    "73": "Rhizosolenia",
+    "74": "Scrippsiella",
+    "75": "Skeleonema",
+    "76": "Skeletonema",
+    "77": "Spiky_pacman_circular",
+    "78": "Stombidinium_morpho_1",
+    "79": "Strombidium_morpho_2",
+    "80": "Thalassionema",
+    "81": "Thalassiosira",
+    "82": "Tiarina",
+    "83": "Tintinnid",
+    "84": "Tontonia",
+    "85": "Torodinium",
+    "86": "Tropidoneis",
+    "87": "Unknown_morpho_1",
+    "88": "Vicicitus"
+  },
+  "image_size": 224,
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "Akashiwo": 0,
+    "Alexandrium": 1,
+    "Amylax_Gonyaulax_Protoceratium": 2,
+    "Asterionellopsis": 3,
+    "Asterionellopsis_chain": 4,
+    "Asteromphalus": 5,
+    "Bad_Beads": 6,
+    "Bad_blurred": 7,
+    "Bad_mixed_phyto": 8,
+    "Bad_setae": 9,
+    "Centric": 10,
+    "Centric_fuzzy": 11,
+    "Ceratium_divaricatum": 12,
+    "Ceratium_furca": 13,
+    "Ceratium_lineatum": 14,
+    "Chaetoceros": 15,
+    "Ciliate_cutoff": 16,
+    "Ciliate_large": 17,
+    "Ciliate_large_2": 18,
+    "Ciliate_other_morpho_1": 19,
+    "Clusterflagellate_morpho_1": 20,
+    "Clusterflagellate_morpho_2": 21,
+    "Corethron": 22,
+    "Cryptophyte": 23,
+    "Cylindrotheca_Nitzschia": 24,
+    "Detonula_Cerataulina_Lauderia": 25,
+    "Detritus": 26,
+    "Detritus_infection": 27,
+    "Dictyocha": 28,
+    "Dinoflagellate_morpho_1": 29,
+    "Dinoflagellate_morpho_2": 30,
+    "Dinoflagellate_morpho_3": 31,
+    "Dinophysis": 32,
+    "Ditylum": 33,
+    "Entomoneis": 34,
+    "Eucampia": 35,
+    "Euglenoid": 36,
+    "Flagellate_morpho_1": 37,
+    "Flagellate_morpho_2": 38,
+    "Flagellate_morpho_3": 39,
+    "Flagellate_nano_1": 40,
+    "Flagellate_nano_2": 41,
+    "Fragilariopsis": 42,
+    "Guinardia_Dactyliosolen": 43,
+    "Gymnodinium": 44,
+    "Gyrodinium": 45,
+    "Gyrosigma": 46,
+    "Haptophyte_prymnesium": 47,
+    "Hemiaulus": 48,
+    "Hemiselmis": 49,
+    "Heterocapsa_morpho_1": 50,
+    "Heterocapsa_morpho_2": 51,
+    "Heterosigma_akashiwo": 52,
+    "Laboea": 53,
+    "Leptocylindrus": 54,
+    "Lingulodinium": 55,
+    "Margalefidinium": 56,
+    "Mesodinium": 57,
+    "Nano_cluster": 58,
+    "Nano_p_white": 59,
+    "Pennate_med": 60,
+    "Pennate_morpho_1": 61,
+    "Pennate_short": 62,
+    "Pennate_wide": 63,
+    "Peridinium": 64,
+    "Phaeocystis": 65,
+    "Pleurosigma": 66,
+    "Polykrikos": 67,
+    "Proboscia": 68,
+    "Prorocentrum_narrow": 69,
+    "Prorocentrum_wide": 70,
+    "Pseudo-nitzschia": 71,
+    "Pyramimonas": 72,
+    "Rhizosolenia": 73,
+    "Scrippsiella": 74,
+    "Skeleonema": 75,
+    "Skeletonema": 76,
+    "Spiky_pacman_circular": 77,
+    "Stombidinium_morpho_1": 78,
+    "Strombidium_morpho_2": 79,
+    "Thalassionema": 80,
+    "Thalassiosira": 81,
+    "Tiarina": 82,
+    "Tintinnid": 83,
+    "Tontonia": 84,
+    "Torodinium": 85,
+    "Tropidoneis": 86,
+    "Unknown_morpho_1": 87,
+    "Vicicitus": 88
+  },
+  "layer_norm_eps": 1e-12,
+  "model_type": "vit",
+  "num_attention_heads": 12,
+  "num_channels": 3,
+  "num_hidden_layers": 12,
+  "patch_size": 16,
+  "pooler_act": "tanh",
+  "pooler_output_size": 768,
+  "problem_type": "single_label_classification",
+  "qkv_bias": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.52.4"
+}

phytoViT/label_names.json

@@ -0,0 +1,91 @@
+{
+  "0": "Akashiwo",
+  "1": "Alexandrium",
+  "2": "Amylax_Gonyaulax_Protoceratium",
+  "3": "Asterionellopsis",
+  "4": "Asterionellopsis_chain",
+  "5": "Asteromphalus",
+  "6": "Bad_Beads",
+  "7": "Bad_blurred",
+  "8": "Bad_mixed_phyto",
+  "9": "Bad_setae",
+  "10": "Centric",
+  "11": "Centric_fuzzy",
+  "12": "Ceratium_divaricatum",
+  "13": "Ceratium_furca",
+  "14": "Ceratium_lineatum",
+  "15": "Chaetoceros",
+  "16": "Ciliate_cutoff",
+  "17": "Ciliate_large",
+  "18": "Ciliate_large_2",
+  "19": "Ciliate_other_morpho_1",
+  "20": "Clusterflagellate_morpho_1",
+  "21": "Clusterflagellate_morpho_2",
+  "22": "Corethron",
+  "23": "Cryptophyte",
+  "24": "Cylindrotheca_Nitzschia",
+  "25": "Detonula_Cerataulina_Lauderia",
+  "26": "Detritus",
+  "27": "Detritus_infection",
+  "28": "Dictyocha",
+  "29": "Dinoflagellate_morpho_1",
+  "30": "Dinoflagellate_morpho_2",
+  "31": "Dinoflagellate_morpho_3",
+  "32": "Dinophysis",
+  "33": "Ditylum",
+  "34": "Entomoneis",
+  "35": "Eucampia",
+  "36": "Euglenoid",
+  "37": "Flagellate_morpho_1",
+  "38": "Flagellate_morpho_2",
+  "39": "Flagellate_morpho_3",
+  "40": "Flagellate_nano_1",
+  "41": "Flagellate_nano_2",
+  "42": "Fragilariopsis",
+  "43": "Guinardia_Dactyliosolen",
+  "44": "Gymnodinium",
+  "45": "Gyrodinium",
+  "46": "Gyrosigma",
+  "47": "Haptophyte_prymnesium",
+  "48": "Hemiaulus",
+  "49": "Hemiselmis",
+  "50": "Heterocapsa_morpho_1",
+  "51": "Heterocapsa_morpho_2",
+  "52": "Heterosigma_akashiwo",
+  "53": "Laboea",
+  "54": "Leptocylindrus",
+  "55": "Lingulodinium",
+  "56": "Margalefidinium",
+  "57": "Mesodinium",
+  "58": "Nano_cluster",
+  "59": "Nano_p_white",
+  "60": "Pennate_med",
+  "61": "Pennate_morpho_1",
+  "62": "Pennate_short",
+  "63": "Pennate_wide",
+  "64": "Peridinium",
+  "65": "Phaeocystis",
+  "66": "Pleurosigma",
+  "67": "Polykrikos",
+  "68": "Proboscia",
+  "69": "Prorocentrum_narrow",
+  "70": "Prorocentrum_wide",
+  "71": "Pseudo-nitzschia",
+  "72": "Pyramimonas",
+  "73": "Rhizosolenia",
+  "74": "Scrippsiella",
+  "75": "Skeleonema",
+  "76": "Skeletonema",
+  "77": "Spiky_pacman_circular",
+  "78": "Stombidinium_morpho_1",
+  "79": "Strombidium_morpho_2",
+  "80": "Thalassionema",
+  "81": "Thalassiosira",
+  "82": "Tiarina",
+  "83": "Tintinnid",
+  "84": "Tontonia",
+  "85": "Torodinium",
+  "86": "Tropidoneis",
+  "87": "Unknown_morpho_1",
+  "88": "Vicicitus"
+}

phytoViT/model.safetensors

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+size 343510052

vit_model.onnx

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