Daily Papers

Text-to-SQL demands precise reasoning to convert natural language questions into structured queries. While large language models (LLMs) excel in many reasoning tasks, their ability to leverage Chain-of-Thought (CoT) reasoning for text-to-SQL remains underexplored. We identify critical limitations: zero-shot CoT offers minimal gains, and Direct Preference Optimization (DPO) applied without CoT yields marginal improvements. We propose ExCoT, a novel framework that iteratively optimizes open-source LLMs by combining CoT reasoning with off-policy and on-policy DPO, relying solely on execution accuracy as feedback. This approach eliminates the need for reward models or human-annotated preferences. Our experimental results demonstrate significant performance gains: ExCoT improves execution accuracy on BIRD dev set from 57.37% to 68.51% and on Spider test set from 78.81% to 86.59% for LLaMA-3 70B, with Qwen-2.5-Coder demonstrating similar improvements. Our best model achieves state-of-the-art performance in the single-model setting on both BIRD and Spider datasets, notably achieving 68.53% on the BIRD test set.

Translating natural language to SQL remains difficult for complex queries. Such queries often need environmental interaction and self-correction. To address this, we introduce MARS-SQL, a novel multi-agent framework that combines principled task decomposition and interactive reinforcement learning (RL). Our system comprises three specialized agents: a Grounding Agent for schema linking, a Generation Agent for query generation, and a Validation Agent for final selection. The core of our framework is the Generation agent, which is trained via a multi-turn RL policy. Adopting a ReAct-style Think-Act-Observe loop, the agent iteratively generates thoughts, executes SQL actions against a live database, and revises its strategy based on execution feedback, enabling dynamic, stateful reasoning and self-correction. At inference time, we generate multiple interaction trajectories to explore diverse reasoning paths. The Validation agent, then selects the optimal trajectory by modeling verification as a next-token prediction task and choosing the solution with the highest generation probability. This structured workflow pipelines specialized agents. It combines interactive RL for generation with generative modeling for verification. The approach proves highly effective for robust and accurate SQL generation. Experiments show that MARS-SQL achieves state-of-the-art Execution Accuracy of 77.84% on the BIRD dev set and 89.75% on the Spider test set. Our code is available at https://github.com/YangHaolin0526/MARS-SQL.

To tackle the challenges of large language model performance in natural language to SQL tasks, we introduce XiYan-SQL, an innovative framework that employs a multi-generator ensemble strategy to improve candidate generation. We introduce M-Schema, a semi-structured schema representation method designed to enhance the understanding of database structures. To enhance the quality and diversity of generated candidate SQL queries, XiYan-SQL integrates the significant potential of in-context learning (ICL) with the precise control of supervised fine-tuning. On one hand, we propose a series of training strategies to fine-tune models to generate high-quality candidates with diverse preferences. On the other hand, we implement the ICL approach with an example selection method based on named entity recognition to prevent overemphasis on entities. The refiner optimizes each candidate by correcting logical or syntactical errors. To address the challenge of identifying the best candidate, we fine-tune a selection model to distinguish nuances of candidate SQL queries. The experimental results on multiple dialect datasets demonstrate the robustness of XiYan-SQL in addressing challenges across different scenarios. Overall, our proposed XiYan-SQL achieves the state-of-the-art execution accuracy of 89.65% on the Spider test set, 69.86% on SQL-Eval, 41.20% on NL2GQL, and a competitive score of 72.23% on the Bird development benchmark. The proposed framework not only enhances the quality and diversity of SQL queries but also outperforms previous methods.

Translating users' natural language questions into SQL queries (i.e., NL2SQL) significantly lowers the barriers to accessing relational databases. The emergence of Large Language Models has introduced a novel paradigm in NL2SQL tasks, enhancing capabilities dramatically. However, this raises a critical question: Are we fully prepared to deploy NL2SQL models in production? To address the posed questions, we present a multi-angle NL2SQL evaluation framework, NL2SQL360, to facilitate the design and test of new NL2SQL methods for researchers. Through NL2SQL360, we conduct a detailed comparison of leading NL2SQL methods across a range of application scenarios, such as different data domains and SQL characteristics, offering valuable insights for selecting the most appropriate NL2SQL methods for specific needs. Moreover, we explore the NL2SQL design space, leveraging NL2SQL360 to automate the identification of an optimal NL2SQL solution tailored to user-specific needs. Specifically, NL2SQL360 identifies an effective NL2SQL method, SuperSQL, distinguished under the Spdier dataset using the execution accuracy metric. Remarkably, SuperSQL achieves competitive performance with execution accuracy of 87% and 62.66% on the Spider and BIRD test sets, respectively.

The remarkable mechanical properties of spider silk, including its tensile strength and extensibility, are primarily governed by the repetitive regions of the proteins that constitute the fiber, the major ampullate spidroins (MaSps). However, establishing correlations between mechanical characteristics and repeat sequences is challenging due to the intricate sequence-structure-function relationships of MaSps and the limited availability of annotated datasets. In this study, we present a novel computational framework for designing MaSp repeat sequences with customizable mechanical properties. To achieve this, we developed a lightweight GPT-based generative model by distilling the pre-trained ProtGPT2 protein language model. The distilled model was subjected to multilevel fine-tuning using curated subsets of the Spider Silkome dataset. Specifically, we adapt the model for MaSp repeat generation using 6,000 MaSp repeat sequences and further refine it with 572 repeats associated with experimentally determined fiber-level mechanical properties. Our model generates biologically plausible MaSp repeat regions tailored to specific mechanical properties while also predicting those properties for given sequences. Validation includes sequence-level analysis, assessing physicochemical attributes and expected distribution of key motifs as well as secondary structure compositions. A correlation study using BLAST on the Spider Silkome dataset and a test set of MaSp repeats with known mechanical properties further confirmed the predictive accuracy of the model. This framework advances the rational design of spider silk-inspired biomaterials, offering a versatile tool for engineering protein sequences with tailored mechanical attributes.

We present Spider, a large-scale, complex and cross-domain semantic parsing and text-to-SQL dataset annotated by 11 college students. It consists of 10,181 questions and 5,693 unique complex SQL queries on 200 databases with multiple tables, covering 138 different domains. We define a new complex and cross-domain semantic parsing and text-to-SQL task where different complex SQL queries and databases appear in train and test sets. In this way, the task requires the model to generalize well to both new SQL queries and new database schemas. Spider is distinct from most of the previous semantic parsing tasks because they all use a single database and the exact same programs in the train set and the test set. We experiment with various state-of-the-art models and the best model achieves only 12.4% exact matching accuracy on a database split setting. This shows that Spider presents a strong challenge for future research. Our dataset and task are publicly available at https://yale-lily.github.io/spider

Cypher, the query language for Neo4j graph databases, plays a critical role in enabling graph-based analytics and data exploration. While substantial research has been dedicated to natural language to SQL query generation (Text2SQL), the analogous problem for graph databases referred to as Text2Cypher remains underexplored. In this work, we introduce SynthCypher, a fully synthetic and automated data generation pipeline designed to address this gap. SynthCypher employs a novel LLMSupervised Generation-Verification framework, ensuring syntactically and semantically correct Cypher queries across diverse domains and query complexities. Using this pipeline, we create SynthCypher Dataset, a large-scale benchmark containing 29.8k Text2Cypher instances. Fine-tuning open-source large language models (LLMs), including LLaMa-3.1- 8B, Mistral-7B, and QWEN-7B, on SynthCypher yields significant performance improvements of up to 40% on the Text2Cypher test set and 30% on the SPIDER benchmark adapted for graph databases. This work demonstrates that high-quality synthetic data can effectively advance the state-of-the-art in Text2Cypher tasks.

This paper proposes a ChatGPT-based zero-shot Text-to-SQL method, dubbed C3, which achieves 82.3\% in terms of execution accuracy on the holdout test set of Spider and becomes the state-of-the-art zero-shot Text-to-SQL method on the Spider Challenge. C3 consists of three key components: Clear Prompting (CP), Calibration with Hints (CH), and Consistent Output (CO), which are corresponding to the model input, model bias and model output respectively. It provides a systematic treatment for zero-shot Text-to-SQL. Extensive experiments have been conducted to verify the effectiveness and efficiency of our proposed method.

We present Archer, a challenging bilingual text-to-SQL dataset specific to complex reasoning, including arithmetic, commonsense and hypothetical reasoning. It contains 1,042 English questions and 1,042 Chinese questions, along with 521 unique SQL queries, covering 20 English databases across 20 domains. Notably, this dataset demonstrates a significantly higher level of complexity compared to existing publicly available datasets. Our evaluation shows that Archer challenges the capabilities of current state-of-the-art models, with a high-ranked model on the Spider leaderboard achieving only 6.73% execution accuracy on Archer test set. Thus, Archer presents a significant challenge for future research in this field.

Long sequences of text are challenging in the context of transformers, due to quadratic memory increase in the self-attention mechanism. As this issue directly affects the translation from natural language to SQL queries (as techniques usually take as input a concatenated text with the question and the database schema), we present techniques that allow long text sequences to be handled by transformers with up to 512 input tokens. We propose a training process with database schema pruning (removal of tables and columns names that are useless for the query of interest). In addition, we used a multilingual approach with the mT5-large model fine-tuned with a data-augmented Spider dataset in four languages simultaneously: English, Portuguese, Spanish, and French. Our proposed technique used the Spider dataset and increased the exact set match accuracy results from 0.718 to 0.736 in a validation dataset (Dev). Source code, evaluations, and checkpoints are available at: https://github.com/C4AI/gap-text2sql.

Advancing AI in computational pathology requires large, high-quality, and diverse datasets, yet existing public datasets are often limited in organ diversity, class coverage, or annotation quality. To bridge this gap, we introduce SPIDER (Supervised Pathology Image-DEscription Repository), the largest publicly available patch-level dataset covering multiple organ types, including Skin, Colorectal, and Thorax, with comprehensive class coverage for each organ. SPIDER provides high-quality annotations verified by expert pathologists and includes surrounding context patches, which enhance classification performance by providing spatial context. Alongside the dataset, we present baseline models trained on SPIDER using the Hibou-L foundation model as a feature extractor combined with an attention-based classification head. The models achieve state-of-the-art performance across multiple tissue categories and serve as strong benchmarks for future digital pathology research. Beyond patch classification, the model enables rapid identification of significant areas, quantitative tissue metrics, and establishes a foundation for multimodal approaches. Both the dataset and trained models are publicly available to advance research, reproducibility, and AI-driven pathology development. Access them at: https://github.com/HistAI/SPIDER

Figuring out which Pre-Trained Model (PTM) from a model zoo fits the target task is essential to take advantage of plentiful model resources. With the availability of numerous heterogeneous PTMs from diverse fields, efficiently selecting the most suitable PTM is challenging due to the time-consuming costs of carrying out forward or backward passes over all PTMs. In this paper, we propose Model Spider, which tokenizes both PTMs and tasks by summarizing their characteristics into vectors to enable efficient PTM selection. By leveraging the approximated performance of PTMs on a separate set of training tasks, Model Spider learns to construct tokens and measure the fitness score between a model-task pair via their tokens. The ability to rank relevant PTMs higher than others generalizes to new tasks. With the top-ranked PTM candidates, we further learn to enrich task tokens with their PTM-specific semantics to re-rank the PTMs for better selection. Model Spider balances efficiency and selection ability, making PTM selection like a spider preying on a web. Model Spider demonstrates promising performance in various configurations of model zoos.