study_ID
stringlengths 6
18
| platform
stringclasses 3
values | platform_detail
stringlengths 36
108
| study_type
stringclasses 3
values | pathogen
stringclasses 8
values | vaccine
stringlengths 4
31
⌀ | tissue
stringclasses 5
values | raw_data
stringclasses 2
values | antibody
stringclasses 2
values | num_subjects
int64 5
271
| num_observations
int64 12
880
| num_cells
float64 49.8k
647k
⌀ | num_observed_genes
float64 12.3k
41k
⌀ | number_of_timepoints median(min, max)
stringlengths 8
11
⌀ | observed_timepoints
stringlengths 1
242
⌀ | meta_variable_list
stringlengths 20
254
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GSE68310
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
mixed exposure
|
influenza_A_virus; influenza_B_virus; enterovirus; human_coronavirus; human_rhinovirus; respiratory_syncytial_virus
| null |
whole blood
|
yes
|
yes
| 133
| 880
| null | 18,755
|
7 (4, 7)
|
Baseline, 0.0, 2.0, 4.0, 6.0, 21.0
|
geo_accession;ID;study_ID;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;sex;age;Medications;Duration_of_symptoms
|
GSE194378
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
mixed exposure
|
influenza
|
Influenza QIV
|
whole blood
|
yes
|
yes
| 75
| 412
| null | 21,690
|
5 (0, 9)
|
-7.0, 0.0, 1.0, 7.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;title;timepoint;MFC;responder;study_group;vaccine;sex;age;ethnicity;race;symptom_group_previous_covid;side_effect;Duration_of_symptoms;days.since.covid.19.diagnosis;influenza.vaccination.count..previous.10.years.
|
GSE74811
|
microarray
|
GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 28
| 83
| null | 18,319
|
3 (2, 3)
|
0.0, 3.0, 7.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine
|
GSE74813
|
microarray
|
GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 63
| 286
| null | 18,319
|
5 (1, 5)
|
0.0, 1.0, 3.0, 7.0, 14.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine;sex;age;race
|
GSE74815
|
microarray
|
GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 26
| 75
| null | 18,319
|
3 (2, 3)
|
0.0, 3.0, 7.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine
|
GSE74816
|
microarray
|
GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 72
| 177
| null | 18,319
|
2 (2, 3)
|
0.0, 3.0, 7.0
|
geo_accession;ID;tissue;pathogen;title;timepoint;MFC;responder;study_group;Enrollment_year;sex;age
|
GSE48023
|
microarray
|
GPL10558; Illumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 110
| 417
| null | 20,514
|
4 (3, 4)
|
0.0, 1.0, 3.0, 14.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age
|
GSE48018
|
microarray
|
GPL6947; Illumina HumanHT-12 V3.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 116
| 431
| null | 18,736
|
4 (1, 4)
|
0.0, 1.0, 3.0, 14.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age
|
GSE41080
|
microarray
|
GPL6947; Illumina HumanHT-12 V3.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 91
| 91
| null | 18,761
|
1 (1, 1)
|
0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;BMI
|
GSE59743
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 30
| 120
| null | 20,402
|
4 (4, 4)
|
0.0, 2.0, 3.0, 4.0, 7.0, 8.0, 9.0, 28.0, 36.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc
|
GSE59654
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 39
| 156
| null | 19,056
|
4 (4, 4)
|
0.0, 2.0, 4.0, 7.0, 24.0, 28.0, 32.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc
|
GSE101709
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 26
| 98
| null | 20,420
|
4 (1, 4)
|
0.0, 2.0, 7.0, 28.0, 43.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;age_group;immport_expsamp_acc
|
GSE59635
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 19
| 72
| null | 20,525
|
4 (3, 4)
|
0.0, 4.0, 7.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc
|
GSE101710
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 20
| 79
| null | 20,420
|
4 (3, 4)
|
0.0, 2.0, 7.0, 25.0, 28.0, 37.0, 41.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;age_group;immport_expsamp_acc
|
GSE47353
|
microarray
|
GPL6244; [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 63
| 292
| null | 22,698
|
5 (1, 5)
|
-7.0, 0.0, 1.0, 7.0, 70.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity
|
GSE190001_PRIME
|
RNA-seq
|
GPL30296; Illumina Hiseq 4000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
Pfizer BioNTech/ Moderna
|
whole blood
|
yes
|
yes
| 23
| 213
| null | 40,867
|
10 (2, 11)
|
1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0, 14.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose;sex;age;ethnicity;PreviousCOVID19;UnderlyingDisease;turbo_reatment;Medications;side_effect
|
GSE190001_BOOST
|
RNA-seq
|
GPL30296; Illumina Hiseq 4000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
Pfizer BioNTech/ Moderna
|
whole blood
|
yes
|
yes
| 23
| 226
| null | 40,867
|
10 (7, 11)
|
1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0, 14.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose;sex;age;ethnicity;PreviousCOVID19;UnderlyingDisease;turbo_reatment;Medications;side_effect
|
SDY311
|
microarray
|
GPL6947; Illumina HumanHT-12 V3.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 63
| 73
| null | 20,538
|
1 (1, 2)
|
0.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;Expsample.Accession;ethnicity;race
|
SDY112
|
microarray
|
GPL6947; Illumina HumanHT-12 V3.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 89
| 89
| null | 18,549
|
1 (1, 1)
|
0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race
|
SDY315
|
microarray
|
GPL6947; Illumina HumanHT-12 V3.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
yes
|
yes
| 71
| 71
| null | 18,549
|
1 (1, 1)
|
0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race
|
GSE207750
|
RNA-seq
|
GPL24676; llumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
influenza
|
Influenza TIV
|
whole blood
|
no
|
yes
| 271
| 271
| null | 24,655
|
1 (1, 1)
|
0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;MFC;responder;study_group;vaccine;sex;age;race_ethnicity;BMI;Vaccinated.in.prior.3.seasons;Height_cm;Weight_kg;Current.smoker;Prior.smoker;Sleep.apnea
|
GSE246525
|
RNA-seq
|
GPL28038; DNBSEQ-G400 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
whole blood
|
yes
|
yes
| 10
| 38
| null | 29,426
|
4 (3, 4)
|
0.0, 1.0, 2.0, 14.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;responder_original;vaccine;sex
|
GSE201533
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
ChAdOx1/BNT162b2
|
PBMC
|
yes
|
yes
| 43
| 161
| null | 24,580
|
3 (2, 6)
|
0.0, 1.0, 2.0, 3.0, 4.0, 7.0, 8.0, 9.0, 10.0
|
geo_accession;ID;study_ID;tissue;platform;title;timepoint;vaccine_dose;sex;age;BMI
|
GSE190747
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
PBMC
|
yes
|
yes
| 30
| 115
| null | 24,580
|
3 (2, 5)
|
0.0, 1.0, 7.0, 10.0, 11.0, 34.0, 35.0, 40.0, 41.0, 48.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;BMI;UnderlyingDisease;side_effect
|
GSE199750
|
RNA-seq
|
GPL28038; DNBSEQ-G400 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
ChAdOx1/BNT162b2
|
whole blood
|
yes
|
yes
| 86
| 260
| null | 40,952
|
3 (1, 4)
|
V0, V1, V2A, V3A
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint_group;MFC;responder;vaccine;sex;age
|
GSE169159
|
RNA-seq
|
GPL15520; Illumina MiSeq (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
whole blood
|
yes
|
yes
| 32
| 185
| null | 23,625
|
6 (4, 7)
|
0.0, 1.0, 2.0, 7.0, 21.0, 22.0, 23.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;title;timepoint;MFC;responder;vaccine;vaccine_dose;sex;age
|
GSE29614
|
microarray
|
GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 9
| 27
| null | 19,498
|
3 (3, 3)
|
0.0, 3.0, 7.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine
|
GSE29615
|
microarray
|
GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
|
vaccine
|
influenza
|
Influenza LAIV
|
PBMC
|
yes
|
yes
| 28
| 83
| null | 18,319
|
3 (2, 3)
|
0.0, 3.0, 7.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine
|
GSE29617
|
microarray
|
GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 28
| 80
| null | 18,319
|
3 (2, 3)
|
0.0, 3.0, 7.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine
|
GSE48762
|
microarray
|
GPL6947; Illumina HumanHT-12 V3.0 expression beadchip
|
vaccine
|
influenza/pneumococcal
|
Influenza TIV/Saline/Pneumovax
|
whole blood
|
yes
|
yes
| 34
| 621
| null | 18,771
|
12 (3, 22)
|
-168.0, -7.0, 0.0, 0.5, 1.0, 1.5, 3.0, 6.0, 7.0, 9.0, 10.0, 12.0, 14.0, 15.0, 21.0, 24.0, 28.0, 36.0, 48.0
|
geo_accession;ID;study_ID;tissue;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;immport_expsamp_acc;ethnicity;race
|
GSE45735
|
RNA-seq
|
GPL10999; Illumina Genome Analyzer IIx (Homo sapiens)
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
yes
| 5
| 54
| null | 24,655
|
11 (10, 11)
|
0.0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race
|
GSE201642
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
ChAdOx1/BNT162b2
|
PBMC
|
yes
|
yes
| 15
| 48
| null | 24,580
|
3 (2, 4)
|
0.0, 1.0, 2.0, 7.0, 8.0, 26.0, 28.0, 30.0, 31.0, 33.0, 34.0, 35.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;study_group;vaccine;sex;age;UnderlyingDisease
|
GSE250023
|
RNA-seq
|
GPL28038; DNBSEQ-G400 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
whole blood
|
yes
|
yes
| 18
| 75
| null | 37,624
|
4 (3, 5)
|
0.0, 1.5, 7.0, 23.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;responder_original;vaccine;sex;UnderlyingDisease
|
challenge_covid19
|
scRNA-seq
|
Illumina NovaSeq 6000 (Homo sapiens)
|
inoculation
|
SARS-CoV-2
| null |
PBMC
|
no
|
yes
| 16
| 144
| 606,074
| null | null | null |
List in the h5ad obs
|
GSE246937
|
scRNA-seq
|
GPL21697; NextSeq 550 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b
|
whole blood
|
no
|
yes
| 10
| 25
| 49,829
| null | null | null |
List in the h5ad obs
|
E_MTAB_12993_nose
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
inoculation
|
SARS-CoV-2
| null |
nasal swab
|
no
|
no
| 19
| 96
| null | 28,848
|
5 (1, 7)
|
-1.0, 1.0, 3.0, 5.0, 7.0, 10.0, 14.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age
|
E_MTAB_12993_blood
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
inoculation
|
SARS-CoV-2
| null |
whole blood
|
no
|
no
| 35
| 374
| null | 28,848
|
11 (7, 11)
|
0.0, 0.25, 1.0, 2.0, 3.0, 4.0, 5.0, 7.0, 10.0, 13.0, 14.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age
|
GSE11348
|
microarray
|
GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
|
inoculation
|
HRV
| null |
nasal swab
|
yes
|
no
| 31
| 93
| null | 18,751
|
3 (3, 3)
|
0.0, 0.333333333, 2.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age;sham
|
GSE61754
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
inoculation
|
H3N2
| null |
whole blood
|
yes
|
no
| 22
| 88
| null | 20,120
|
4 (4, 4)
|
0.0, 0.5, 1.0, 2.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;symptom_group_original;study_group;seroconversion;viral_shedding
|
GSE90732
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
inoculation
|
H1N1
| null |
whole blood
|
yes
|
no
| 21
| 108
| null | 20,523
|
5 (5, 6)
|
0.0, 1.0, 2.0, 3.0, 4.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;Total_DSS;study_group;sex;age
|
GSE155237
|
RNA-seq
|
GPL16791; Illumina HiSeq 2500 (Homo sapiens)
|
inoculation
|
RSV
| null |
nasal swab
|
yes
|
no
| 40
| 78
| null | 40,128
|
2 (1, 2)
|
0.0, 3.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;infection_group;symptom_group
|
GSE73072_H1N1_DEE4
|
microarray
|
GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG]
|
inoculation
|
H1N1
| null |
whole blood
|
yes
|
no
| 19
| 386
| null | 12,313
|
21 (15, 21)
|
-0.875, 0.0, 0.208333333, 0.5, 0.916666667, 1.208333333, 1.5, 1.916666667, 2.208333333, 2.5, 2.916666667, 3.208333333, 3.5, 3.916666667, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.5, 5.916666667, 6.916666667
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group
|
GSE73072_H1N1_DEE3
|
microarray
|
GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG]
|
inoculation
|
H1N1
| null |
whole blood
|
yes
|
no
| 24
| 477
| null | 12,313
|
20 (19, 20)
|
-0.875, 0.0, 0.208333333, 0.5, 0.875, 1.208333333, 1.5, 1.875, 2.208333333, 2.5, 2.875, 3.208333333, 3.5, 3.875, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.916666667, 6.916666667
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group
|
GSE73072_H3N2_DEE2
|
microarray
|
GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG]
|
inoculation
|
H3N2
| null |
whole blood
|
yes
|
no
| 17
| 355
| null | 12,313
|
21 (20, 21)
|
-0.958333333, 0.0, 0.208333333, 0.5, 0.916666667, 1.208333333, 1.5, 1.916666667, 2.208333333, 2.5, 2.916666667, 3.208333333, 3.5, 3.916666667, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.5, 5.916666667, 6.916666667
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group
|
GSE73072_H3N2_DEE5
|
microarray
|
GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG]
|
inoculation
|
H3N2
| null |
whole blood
|
yes
|
no
| 21
| 482
| null | 12,313
|
23 (22, 23)
|
-1.25, 0.083333333, 0.416666667, 0.75, 1.083333333, 1.416666667, 1.75, 2.083333333, 2.416666667, 2.75, 3.083333333, 3.416666667, 3.75, 4.083333333, 4.416666667, 4.75, 5.083333333, 5.416666667, 5.75, 6.083333333, 6.75, 7.083333333, 28.33333333
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group
|
GSE73072_HRV_DUKE
|
microarray
|
GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG]
|
inoculation
|
HRV
| null |
whole blood
|
yes
|
no
| 27
| 471
| null | 12,313
|
19 (12, 19)
|
-0.458333333, 0.0, 0.166666667, 0.333333333, 0.5, 0.666666667, 0.833333333, 1.0, 1.25, 1.5, 1.75, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.666666667
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;sham
|
GSE73072_HRV_UVA
|
microarray
|
GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG]
|
inoculation
|
HRV
| null |
whole blood
|
yes
|
no
| 20
| 295
| null | 12,313
|
15 (13, 15)
|
-0.458333333, 0.0, 0.166666667, 0.333333333, 0.5, 0.666666667, 0.833333333, 1.0, 1.25, 1.5, 1.75, 2.0, 3.0, 4.0, 5.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group
|
GSE73072_RSV_DEE1
|
microarray
|
GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG]
|
inoculation
|
RSV
| null |
whole blood
|
yes
|
no
| 20
| 420
| null | 12,313
|
21 (21, 21)
|
-1.583333333, 0.0, 0.208333333, 0.5, 0.916666667, 1.208333333, 1.5, 1.916666667, 2.208333333, 2.5, 2.916666667, 3.208333333, 3.5, 3.916666667, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.5, 5.916666667, 6.916666667
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group
|
GSE117580
|
RNA-seq
|
GPL20301; Illumina HiSeq 4000 (Homo sapiens)
|
mixed exposure
|
influenza
|
Influenza LAIV/TIV
|
nasal swab
|
yes
|
no
| 35
| 96
| null | 24,655
|
3 (2, 3)
|
-4.0, 2.0, 9.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine
|
GSE220682
|
RNA-seq
|
GPL18573; Illumina NextSeq 500 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
PBMC
|
yes
|
no
| 203
| 705
| null | 21,701
|
4 (1, 4)
|
0.0, 22.0, 180.0, 360.0
|
geo_accession;study_ID;tissue;platform;pathogen;batch;title;timepoint;vaccine
|
GSE228839
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
ChAdOx1/MenACWY
|
whole blood
|
no
|
no
| 100
| 170
| null | 24,655
|
2 (1, 3)
|
CT, CT+7, CT7, D0
|
geo_accession;ID;study_ID;tissue;platform;title;timepoint_group;study_group;vaccine;sex;age
|
GSE276544
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
ChAdOx1/BNT162b2/MVA/mRNA-1273
|
whole blood
|
yes
|
no
| 43
| 305
| null | 30,984
|
7 (5, 8)
|
V1D0, V1D1, V1D3, V1D7, V2D0, V2D1, V2D3, V2D7
|
geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint_group;vaccine
|
GSE209985
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
PBMC
|
yes
|
no
| 32
| 188
| null | 40,696
|
6 (5, 6)
|
0.0, 1.0, 2.0, 7.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;study_group;vaccine;vaccine_dose;sex;age;PreviousCOVID19;diabetes
|
GSE247401
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
ChAdOx1/BNT162b2/mRNA-1273
|
whole blood
|
yes
|
no
| 17
| 50
| null | 29,506
|
2 (2, 4)
|
0.0, 1.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;vaccine;sex
|
GSE265975
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
PBMC
|
yes
|
no
| 29
| 100
| null | 39,368
|
4 (1, 4)
|
0.0, 7.0, 21.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;timepoint_group;study_group;vaccine
|
GSE102012
|
microarray
|
GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate
|
vaccine
|
influenza
|
H5N1
|
whole blood
|
yes
|
no
| 50
| 384
| null | 18,319
|
8 (4, 8)
|
0.0, 1.0, 3.0, 7.0, 21.0, 22.0, 24.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine
|
GSE217770
|
RNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
influenza
|
Influenza LAIV
|
whole blood
|
yes
|
no
| 53
| 371
| null | 40,129
|
7 (7, 7)
|
0.0, 3.0, 7.0, 29.0, 85.0, 92.0, 113.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex
|
GSE230494
|
RNA-seq
|
GPL18573; Illumina NextSeq 500 (Homo sapiens)
|
vaccine
|
influenza
|
Influenza LAIV
|
nasal swab
|
yes
|
yes
| 39
| 60
| null | 40,223
|
2 (1, 2)
|
0.0, 3.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine
|
GSE52005
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza LAIV/TIV
|
whole blood
|
yes
|
no
| 38
| 140
| null | 20,525
|
4 (1, 4)
|
0.0, 1.0, 7.0, 30.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex;age;race
|
GSE107990
|
microarray
|
GPL10558; llumina HumanHT-12 V4.0 expression beadchip
|
vaccine
|
influenza
|
Influenza TIV
|
PBMC
|
yes
|
no
| 172
| 671
| null | 20,518
|
4 (2, 4)
|
0.0, 2.0, 7.0, 28.0
|
geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex;age;ethnicity
|
GSE281864
|
RNA-seq
|
GPL20301; Illumina HiSeq 4000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
whole blood
|
yes
|
no
| 17
| 193
| null | 37,507
| null |
1, 2, 3, 4, 5, 6, 7, 8, 9, 10,14
|
geo_accession;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose
|
EMTAB10026
|
scRNA-seq
|
Illumina NovaSeq 6000 (Homo sapiens)
|
inoculation
|
SARS-CoV-2
| null |
PBMC
|
no
|
no
| 130
| 143
| 647,366
| null | null | null |
List in the h5ad obs
|
eskd_covid19
|
scRNA-seq
|
Illumina NovaSeq 6000 (Homo sapiens)
|
mixed exposure
|
SARS-CoV-2
| null |
nasal swab/PBMC
|
no
|
no
| 61
| 187
| 588,389
| null | null | null |
List in the h5ad obs
|
GSE201534
|
scRNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
ChAdOx1/BNT162b2
|
PBMC
|
no
|
no
| 6
| 12
| 87,160
| null | null | null |
List in the h5ad obs
|
GSE247917
|
scRNA-seq
|
GPL18573; Illumina NextSeq 500 (Homo sapiens)/GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
PBMC
|
no
|
no
| 14
| 54
| 195,489
| null | null | null |
List in the h5ad obs
|
GSE195673
|
scRNA-seq
|
GPL24676; Illumina NovaSeq 6000 (Homo sapiens)
|
vaccine
|
SARS-CoV-2
|
BNT162b2
|
PBMC/Lymph Node
|
no
|
no
| 8
| 56
| 383,635
| null | null | null |
List in the h5ad obs
|
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