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maize-allele-frequency-raw-data

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train · 9.37M rows

CHR int64 1 10	POS int64 31.1k 308M	REF stringclasses 4 values	ALT stringclasses 4 values	REF_FREQ int64 4 2.44k	ALT_FREQ int64 4 2.44k	MAF float64 0 0.5	phyloP float64 -6.94 0.7 ⌀	phastCons float64 0 1 ⌀	PlantCAD float64 -13.59 12.5
1	46,446	G	C	1,868	580	0.236928	-1.103	0	2.320312
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1	72,784	C	T	2,434	14	0.005718	null	null	0.209717
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1	109,961	C	T	2,436	12	0.004901	-0.323	0	-0.895508
1	109,962	A	G	2,442	6	0.00245	-0.323	0	-4.261719
1	110,107	T	C	2,444	4	0.001633	-0.664	0	0.3125
1	112,028	A	G	2,092	356	0.145425	-1.103	0.869	-1.554688
1	112,056	C	A	2,438	10	0.004084	-1.625	0	0.402344
1	112,152	T	A	2,444	4	0.001633	-0.664	0	-0.242187
1	118,823	T	G	1,956	492	0.20098	-0.664	0.992	3.539062
1	119,150	C	T	2,442	6	0.00245	-0.323	0.007	-0.066406
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1	119,355	C	A	2,228	220	0.089869	-0.323	0	0.462891
1	120,931	C	A	2,132	316	0.129085	-0.323	0.004	-3.550781
1	121,343	C	T	2,082	366	0.14951	-0.323	0	0.636719
1	123,518	T	C	2,444	4	0.001633	-0.664	0	2.290039
1	123,522	C	A	2,444	4	0.001633	-1.625	0	-1.132812
1	123,578	G	A	2,442	6	0.00245	-1.103	0	-1.570312
1	123,585	G	A	2,444	4	0.001633	-1.103	0	-0.507813
1	123,804	C	T	2,090	358	0.146242	-0.664	0	-0.602051
1	123,861	C	T	2,430	18	0.007352	null	null	0.109375
1	123,912	C	T	2,444	4	0.001633	-1.625	0	0.380859
1	123,930	T	G	2,436	12	0.004901	-2.873	0	-0.457031
1	124,140	C	T	2,438	10	0.004084	-1.625	0	-0.253906
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1	124,520	C	T	2,436	12	0.004901	-0.664	0	-2.640625
1	124,527	C	T	2,442	6	0.00245	-1.103	0	0.289063
1	124,772	T	C	2,444	4	0.001633	-1.103	0	0.640625
1	124,785	A	G	2,438	10	0.004084	-2.218	0	-1.710937
1	124,811	C	G	2,436	12	0.004901	-0.323	0.004	-4.90625
1	124,841	T	A	2,398	50	0.020424	-0.323	0.01	0.515625
1	124,888	C	T	2,444	4	0.001633	-0.323	0	-1.28125
1	124,936	C	A	2,154	294	0.120098	null	null	1.554688
1	124,937	A	C	2,232	216	0.088235	null	null	-6.460938
1	125,621	C	A	2,444	4	0.001633	-0.323	0.001	-0.023438
1	125,673	C	T	2,432	16	0.006535	null	null	-1.228516
1	125,762	T	C	2,372	76	0.031045	-0.323	0.001	1.289062
1	125,822	C	T	2,440	8	0.003267	-0.323	0.002	0.556641
1	125,840	G	C	2,430	18	0.007352	-0.323	0.002	-1.041016
1	125,863	G	A	2,094	354	0.144608	-0.323	0	-0.060547
1	125,946	C	T	2,442	6	0.00245	-0.323	0.006	-2.445313
1	126,019	A	G	1,948	500	0.204248	-0.664	0.007	1.945312
1	126,043	G	A	2,426	22	0.008986	-0.323	0.004	-0.640625
1	126,069	G	A	2,434	14	0.005718	null	null	-1.179687
1	126,765	A	G	2,152	296	0.120915	-1.625	0	0.003906
1	126,784	A	G	148	2,300	0.060457	-0.664	0	-0.720703
1	126,957	C	T	2,444	4	0.001633	-0.323	0.003	-0.089844
1	127,071	C	G	146	2,302	0.05964	-0.323	0.001	0.626953
1	127,210	C	T	2,442	6	0.00245	-0.664	0	0.776367
1	127,449	A	G	1,956	492	0.20098	-0.323	0	-2.164062
1	127,978	C	T	2,048	400	0.163399	-0.323	0.527	-0.94043
1	127,985	C	T	2,438	10	0.004084	-0.323	0.606	-0.855469
1	128,190	G	A	2,444	4	0.001633	-0.323	0.882	-0.792969
1	128,214	C	T	2,214	234	0.095588	-0.323	0.827	0.171387
1	128,904	T	C	2,438	10	0.004084	-0.323	0	-0.68457
1	128,982	C	T	2,440	8	0.003267	-1.103	0	1.162109
1	128,999	A	C	2,444	4	0.001633	-0.323	0	-1.109375
1	129,024	C	T	2,436	12	0.004901	-2.218	0	0.908203
1	129,488	A	G	1,956	492	0.20098	-1.625	0.994	-0.670898
1	129,686	T	C	1,598	850	0.347222	-0.323	0	-0.59375
1	129,851	G	A	2,066	382	0.156046	-0.664	0.942	0.961914
1	129,985	T	C	2,438	10	0.004084	-0.323	0	0.173828
1	143,753	C	T	2,440	8	0.003267	-0.323	0	0.275391
1	143,914	G	A	1,968	480	0.196078	0.695	0	0.685059

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