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experiments/<frozen runpy>-ea9ec9.json
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| 1 |
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{
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| 2 |
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"ray_job_id": "15000000",
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| 3 |
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"git_commit": "28a02cb464a7e670393b8809d853f5b5b48ed4a2",
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| 4 |
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"caller_path": "<frozen runpy>",
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| 5 |
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| 6 |
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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{
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| 11 |
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| 12 |
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| 13 |
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| 14 |
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| 15 |
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| 16 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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| 17 |
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"task": "acceptor_core_noncore_classification",
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| 18 |
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"split": "test_maize",
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 34 |
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| 35 |
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"description": "Acceptor Core Noncore Classification (test_maize, PlantCAD2-Small-l24-d0768)",
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| 36 |
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"override_output_path": null,
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| 37 |
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"version": {
|
| 38 |
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"name": "acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
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| 39 |
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"config": {},
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| 40 |
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"dependencies": []
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| 41 |
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},
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| 42 |
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"dependencies": [],
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| 43 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-b25c23"
|
| 44 |
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},
|
| 45 |
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{
|
| 46 |
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"name": "conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768",
|
| 47 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.evo_cons_task",
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| 48 |
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"config": {
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| 49 |
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"input_path": null,
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| 50 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768-21905f",
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| 51 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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| 52 |
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"task": "conservation_within_poaceae_non_tis",
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| 53 |
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"split": "test",
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| 54 |
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| 55 |
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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"description": "Conservation Within Poaceae Non Tis (test, PlantCAD2-Small-l24-d0768)",
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| 66 |
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"override_output_path": null,
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| 67 |
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"version": {
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| 68 |
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"name": "conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768",
|
| 69 |
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"config": {},
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| 70 |
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"dependencies": []
|
| 71 |
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},
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| 72 |
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"dependencies": [],
|
| 73 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768-21905f"
|
| 74 |
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},
|
| 75 |
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{
|
| 76 |
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"name": "structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768",
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| 77 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.sv_task",
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| 78 |
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| 79 |
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| 80 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768-6d7d00",
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| 81 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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| 82 |
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"task": "structural_variant_effect_prediction",
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| 83 |
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| 84 |
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| 85 |
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| 86 |
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| 87 |
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| 88 |
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| 92 |
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| 93 |
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| 94 |
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| 95 |
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"description": "Structural Variant Effect Prediction (test, PlantCAD2-Small-l24-d0768)",
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| 96 |
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| 97 |
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"version": {
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| 98 |
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"name": "structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768",
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| 99 |
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| 100 |
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"dependencies": []
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| 101 |
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| 102 |
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| 103 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768-6d7d00"
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| 104 |
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},
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| 105 |
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{
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| 106 |
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"name": "donor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
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| 107 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.core_noncore_task",
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| 108 |
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"config": {
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| 109 |
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"input_path": null,
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| 110 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/donor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-023d2a",
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| 111 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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| 112 |
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"task": "donor_core_noncore_classification",
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| 113 |
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"split": "test_maize",
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| 114 |
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| 115 |
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"label_column": "label",
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| 116 |
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| 117 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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| 118 |
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"device": "cuda",
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| 119 |
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| 120 |
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| 128 |
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"motif_len": 3
|
| 129 |
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},
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| 130 |
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"description": "Donor Core Noncore Classification (test_maize, PlantCAD2-Small-l24-d0768)",
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| 131 |
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"override_output_path": null,
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| 132 |
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"version": {
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| 133 |
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"name": "donor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
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| 134 |
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"config": {},
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| 135 |
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"dependencies": []
|
| 136 |
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},
|
| 137 |
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"dependencies": [],
|
| 138 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/donor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-023d2a"
|
| 139 |
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},
|
| 140 |
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{
|
| 141 |
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"name": "tis_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
|
| 142 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.core_noncore_task",
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| 143 |
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"config": {
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| 144 |
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"input_path": null,
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| 145 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/tis_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-ca5ded",
|
| 146 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
|
| 147 |
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"task": "tis_core_noncore_classification",
|
| 148 |
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"split": "test_maize",
|
| 149 |
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"seq_column": "sequence",
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| 150 |
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"label_column": "label",
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| 151 |
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| 152 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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| 153 |
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"device": "cuda",
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| 154 |
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| 155 |
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| 156 |
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| 159 |
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],
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| 163 |
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"motif_len": 3
|
| 164 |
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},
|
| 165 |
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"description": "Tis Core Noncore Classification (test_maize, PlantCAD2-Small-l24-d0768)",
|
| 166 |
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"override_output_path": null,
|
| 167 |
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"version": {
|
| 168 |
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"name": "tis_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
|
| 169 |
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"config": {},
|
| 170 |
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"dependencies": []
|
| 171 |
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},
|
| 172 |
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"dependencies": [],
|
| 173 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/tis_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-ca5ded"
|
| 174 |
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},
|
| 175 |
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{
|
| 176 |
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"name": "tts_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
|
| 177 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.core_noncore_task",
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| 178 |
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"config": {
|
| 179 |
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|
| 180 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/tts_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-d8c410",
|
| 181 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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| 182 |
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"task": "tts_core_noncore_classification",
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| 183 |
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| 184 |
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| 185 |
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| 186 |
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| 187 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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| 188 |
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| 199 |
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|
| 200 |
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"description": "Tts Core Noncore Classification (test_maize, PlantCAD2-Small-l24-d0768)",
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| 201 |
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"override_output_path": null,
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| 202 |
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"version": {
|
| 203 |
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"name": "tts_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
|
| 204 |
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"config": {},
|
| 205 |
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"dependencies": []
|
| 206 |
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|
| 207 |
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"dependencies": [],
|
| 208 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/tts_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-d8c410"
|
| 209 |
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}
|
| 210 |
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]
|
| 211 |
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}
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