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experiments/<frozen runpy>-8e5be0.json
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{
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"ray_job_id": "14000000",
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"git_commit": "28a02cb464a7e670393b8809d853f5b5b48ed4a2",
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"caller_path": "<frozen runpy>",
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"created_date": "2025-10-29T23:46:02.392238",
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"user": "ubuntu",
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"prefix": "hf://datasets/plantcad/_dev_pc2_eval_r1",
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"description": null,
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"steps": [
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{
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"name": "acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.core_noncore_task",
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"config": {
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"input_path": null,
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-b25c23",
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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"task": "acceptor_core_noncore_classification",
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"split": "test_maize",
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"seq_column": "sequence",
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"label_column": "label",
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"num_workers": null,
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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"device": "cuda",
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"batch_size": 32,
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"sample_rate": 1.0,
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"sample_max_size": 2000,
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"sample_seed": 42,
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"mask_token_indexes": [
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4094,
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4095,
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4096
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],
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"motif_len": 3
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},
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"description": "Acceptor Core Noncore Classification (test_maize, PlantCAD2-Small-l24-d0768)",
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"override_output_path": null,
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"version": {
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"name": "acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
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"config": {},
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"dependencies": []
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},
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"dependencies": [],
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-b25c23"
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},
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{
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"name": "conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768",
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.evo_cons_task",
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"config": {
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"input_path": null,
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768-21905f",
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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| 52 |
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"task": "conservation_within_poaceae_non_tis",
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"split": "test",
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"seq_column": "sequence",
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"label_column": "label",
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"num_workers": null,
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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| 58 |
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"device": "cuda",
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| 59 |
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"batch_size": 32,
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| 60 |
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"sample_rate": 1.0,
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| 61 |
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"sample_max_size": 2000,
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| 62 |
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"sample_seed": 42,
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| 63 |
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"mask_token_index": 4095
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| 64 |
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},
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| 65 |
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"description": "Conservation Within Poaceae Non Tis (test, PlantCAD2-Small-l24-d0768)",
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| 66 |
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"override_output_path": null,
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| 67 |
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"version": {
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| 68 |
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"name": "conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768",
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| 69 |
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"config": {},
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| 70 |
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"dependencies": []
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| 71 |
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},
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| 72 |
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"dependencies": [],
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| 73 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768-21905f"
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| 74 |
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},
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| 75 |
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{
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"name": "structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768",
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| 77 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.sv_task",
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| 78 |
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"config": {
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| 79 |
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"input_path": null,
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| 80 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768-6d7d00",
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| 81 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
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| 82 |
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"task": "structural_variant_effect_prediction",
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| 83 |
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"split": "test",
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| 84 |
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"seq_column": "sequence",
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| 85 |
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"label_column": "label",
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| 86 |
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"num_workers": null,
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| 87 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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| 88 |
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"device": "cuda",
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| 89 |
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"batch_size": 32,
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| 90 |
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"sample_rate": 1.0,
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| 91 |
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"sample_max_size": 2000,
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| 92 |
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"sample_seed": 42,
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| 93 |
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"flanking": 5
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},
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| 95 |
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"description": "Structural Variant Effect Prediction (test, PlantCAD2-Small-l24-d0768)",
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| 96 |
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"override_output_path": null,
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| 97 |
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"version": {
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| 98 |
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"name": "structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768",
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| 99 |
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"config": {},
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| 100 |
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"dependencies": []
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| 101 |
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},
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| 102 |
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"dependencies": [],
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| 103 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_r1/structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768-6d7d00"
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| 104 |
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}
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| 105 |
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]
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| 106 |
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}
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