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README.md
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10 million random examples from Uniref50 representative sequences (October 2023) and computed [selfies](https://github.com/aspuru-guzik-group/selfies) strings. The strings are stored as input ids from a custom selfies tokenizer. A BERT tokenizer with this vocabulary has been uploaded to this dataset under the files.
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Intended for atom-wise protein language modeling.
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---
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10 million random examples from Uniref50 representative sequences (October 2023) and computed [selfies](https://github.com/aspuru-guzik-group/selfies) strings. The strings are stored as input ids from a custom selfies tokenizer. A BERT tokenizer with this vocabulary has been uploaded to this dataset under the files.
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You can access the tokenizer like this:
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```python
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import os
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from huggingface_hub import hf_hub_download
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from transformers import AutoTokenizer
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repo_path = 'Synthyra/ProteinSelfies'
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local_path = 'ProteinSelfies'
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files = ['special_tokens_map.json', 'tokenizer_config.json', 'vocab.txt']
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os.makedirs(local_path, exist_ok=True)
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for file in files:
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hf_hub_download(
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repo_id=repo_path,
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filename=file,
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repo_type='dataset',
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local_dir=local_path
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)
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tokenizer = AutoTokenizer.from_pretrained(local_path)
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```
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Intended for atom-wise protein language modeling.
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