Create README.md
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README.md
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---
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library_name: transformers
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base_model: 1aurent/phikon-finetuned-lora-kather2016
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tags:
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- feature-extraction
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- image-classification
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- biology
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- cancer
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- owkin
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- histology
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model-index:
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- name: owkin_pancancer
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results:
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- task:
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type: image-classification
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name: Image Classification
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dataset:
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name: 1aurent/Kather-texture-2016
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type: image-classification
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metrics:
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- type: accuracy
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value: 0.932
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name: accuracy
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verified: false
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license: other
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license_name: owkin-non-commercial
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license_link: https://github.com/owkin/HistoSSLscaling/blob/main/LICENSE.txt
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pipeline_tag: image-classification
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datasets:
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- 1aurent/Kather-texture-2016
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metrics:
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- accuracy
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widget:
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- src: >-
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https://datasets-server.huggingface.co/assets/1aurent/Kather-texture-2016/--/default/train/0/image/image.jpg
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example_title: adipose
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---
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# Model card for phikon-distil-vit-tiny-patch16-224-kather2016
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This model is a distilled version of [owkin/phikon](https://huggingface.co/owkin/phikon) to a TinyViT on the [1aurent/Kather-texture-2016](https://huggingface.co/datasets/1aurent/Kather-texture-2016) dataset.
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## Model Usage
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### Image Classification
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```python
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from transformers import AutoModelForImageClassification, AutoImageProcessor
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from urllib.request import urlopen
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from PIL import Image
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# get example histology image
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img = Image.open(
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urlopen(
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"https://datasets-server.huggingface.co/assets/1aurent/Kather-texture-2016/--/default/train/0/image/image.jpg"
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)
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)
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# load image_processor and model from the hub
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model_name = "1aurent/phikon-distil-vit-tiny-patch16-224-kather2016"
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image_processor = AutoImageProcessor.from_pretrained(model_name)
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model = AutoModelForImageClassification.from_pretrained(model_name)
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inputs = image_processor(img, return_tensors="pt")
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outputs = model(**inputs)
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```
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## Citation
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```bibtex
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@article{Filiot2023.07.21.23292757,
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author = {Alexandre Filiot and Ridouane Ghermi and Antoine Olivier and Paul Jacob and Lucas Fidon and Alice Mac Kain and Charlie Saillard and Jean-Baptiste Schiratti},
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title = {Scaling Self-Supervised Learning for Histopathology with Masked Image Modeling},
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elocation-id = {2023.07.21.23292757},
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year = {2023},
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doi = {10.1101/2023.07.21.23292757},
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publisher = {Cold Spring Harbor Laboratory Press},
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url = {https://www.medrxiv.org/content/early/2023/09/14/2023.07.21.23292757},
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eprint = {https://www.medrxiv.org/content/early/2023/09/14/2023.07.21.23292757.full.pdf},
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journal = {medRxiv}
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}
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```
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