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Laureηt Fainsin

1aurent

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https://laurent.fainsin.bzh/

LFainsin
Laurent2916
laurent-fainsin
1aurent.bsky.social

AI & ML interests

Generative Models connoisseur, Pathology enthusiast, Reproducibility advocate

Recent Activity

new activity 17 days ago

1aurent/vit_large_patch14_224.dinobloom:🚩 Report: Copyright infringement

new activity 17 days ago

1aurent/vit_base_patch14_224.dinobloom:🚩 Report: Copyright infringement

new activity 17 days ago

1aurent/vit_small_patch14_224.dinobloom:🚩 Report: Copyright infringement

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Organizations

1aurent 's collections 12

TIA Toolbox models

https://tia-toolbox.readthedocs.io/en/latest/pretrained.html

1aurent/NCT-CRC-HE

Preview • Updated May 25, 2024 • 284 • 3
1aurent/resnet18.tiatoolbox-kather100k

Image Classification • 11.2M • Updated Nov 6, 2023 • 10 • 2
1aurent/resnet34.tiatoolbox-kather100k

Image Classification • 21.3M • Updated Nov 6, 2023 • 5
1aurent/resnet50.tiatoolbox-kather100k

Image Classification • 23.6M • Updated Nov 5, 2023 • 7 • 1

KaikoAI models

Towards Training Large-Scale Pathology Foundation Models: from TCGA to Hospital Scale, https://github.com/kaiko-ai/towards_large_pathology_fms

Towards Large-Scale Training of Pathology Foundation Models

Paper • 2404.15217 • Published Mar 24, 2024
1aurent/vit_small_patch16_224.kaiko_ai_towards_large_pathology_fms

Feature Extraction • 21.7M • Updated Jun 7, 2024 • 314
1aurent/vit_small_patch8_224.kaiko_ai_towards_large_pathology_fms

Feature Extraction • 21.7M • Updated Jun 7, 2024 • 226
1aurent/vit_base_patch16_224.kaiko_ai_towards_large_pathology_fms

Feature Extraction • 85.8M • Updated Jun 7, 2024 • 308 • 2

Lunit models

Benchmarking Self-Supervised Learning on Diverse Pathology Datasets, https://github.com/lunit-io/benchmark-ssl-patho

Benchmarking Self-Supervised Learning on Diverse Pathology Datasets

Paper • 2212.04690 • Published Dec 9, 2022
1aurent/resnet50.lunit_bt

Image Classification • 23.6M • Updated Nov 26, 2023 • 19
1aurent/resnet50.lunit_swav

Image Classification • 23.6M • Updated Nov 26, 2023 • 6
1aurent/resnet50.lunit_mocov2

Image Classification • 23.6M • Updated Nov 26, 2023 • 7

MedMAE models

Delving into Masked Autoencoders for Multi-Label Thorax Disease Classification, https://github.com/lambert-x/medical_mae

Delving into Masked Autoencoders for Multi-Label Thorax Disease Classification

Paper • 2210.12843 • Published Oct 23, 2022
timm/densenet121.tv_in1k

Image Classification • Updated Jan 21 • 4.97k
1aurent/densenet121.medmae_in1k_ft_CXR

Image Classification • 7.05M • Updated Nov 28, 2023 • 4
1aurent/resnet50.medmae_in1k_mocov2

Image Classification • 23.6M • Updated Nov 28, 2023 • 7

Hibou models

Hibou: A Family of Foundational Vision Transformers for Pathology, https://github.com/HistAI/hibou

Hibou: A Family of Foundational Vision Transformers for Pathology

Paper • 2406.05074 • Published Jun 7, 2024 • 9
histai/hibou-b

Feature Extraction • 85.7M • Updated Aug 20, 2024 • 7.92k • 13
histai/hibou-L

Image Feature Extraction • 0.3B • Updated Aug 20, 2024 • 5.8k • 15

Prov Gigapath models

A whole-slide foundation model for digital pathology from real-world data, https://huggingface.co/prov-gigapath/prov-gigapath

prov-gigapath/prov-gigapath

Image Feature Extraction • Updated Apr 21 • 176k • 150

DinoBloom models

A Foundation Model for Generalizable Cell Embeddings in Hematology, https://github.com/marrlab/DinoBloom

DinoBloom: A Foundation Model for Generalizable Cell Embeddings in Hematology

Paper • 2404.05022 • Published Apr 7, 2024 • 3
1aurent/vit_small_patch14_224.dinobloom

Feature Extraction • 21.6M • Updated May 20, 2024 • 660 • 1
1aurent/vit_base_patch14_224.dinobloom

Feature Extraction • 85.7M • Updated May 20, 2024 • 685 • 1
1aurent/vit_large_patch14_224.dinobloom

Feature Extraction • 0.3B • Updated May 20, 2024 • 22

Transpath models

Transformer-based Unsupervised Contrastive Learning for Histopathological Image Classification, https://github.com/Xiyue-Wang/TransPath

1aurent/vit_small_patch16_224.transpath_mocov3

Feature Extraction • 21.7M • Updated Nov 26, 2023 • 276 • 2
1aurent/swin_tiny_patch4_window7_224.CTransPath

Feature Extraction • 27.8M • Updated Oct 31, 2023 • 291 • 2

TCGA-BRCA-SSL models

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology, https://github.com/Richarizardd/Self-Supervised-ViT-Path/

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology

Paper • 2203.00585 • Published Mar 1, 2022 • 2
timm/resnet50.a1_in1k

Image Classification • Updated Jul 11 • 3.55M • 39
1aurent/resnet50.tcga_brca_simclr

Feature Extraction • 23.6M • Updated Oct 31, 2023 • 90 • 1
1aurent/vit_small_patch16_256.tcga_brca_dino

Feature Extraction • 21.7M • Updated Oct 31, 2023 • 32

DeblurringMIM models

Deblurring Masked Image Modelling is Better Recipe for Ultrasound Image Analysis, https://github.com/MembrAI/DeblurringMIM

Deblurring Masked Autoencoder is Better Recipe for Ultrasound Image Recognition

Paper • 2306.08249 • Published Jun 14, 2023
1aurent/vit_base_patch16_224.deblurmim_us280k_vanilla_mae

Image Classification • 85.8M • Updated Nov 29, 2023 • 16 • 1
1aurent/vit_base_patch16_224.deblurmim_us280k_deblurring_mae

Image Classification • 85.8M • Updated Nov 29, 2023 • 8

CellViT models

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

Paper • 2306.15350 • Published Jun 27, 2023
histai/cellvit-hibou-l

Updated Aug 21, 2024 • 11

WILDS

WILDS is a benchmark of in-the-wild distribution shifts spanning diverse data modalities and applications.

WILDS: A Benchmark of in-the-Wild Distribution Shifts

Paper • 2012.07421 • Published Dec 14, 2020 • 1
Extending the WILDS Benchmark for Unsupervised Adaptation

Paper • 2112.05090 • Published Dec 9, 2021 • 1
jxie/camelyon17

Viewer • Updated Jun 22, 2023 • 1.06M • 23 • 1
OGB/ogbg-molpcba

Viewer • Updated Feb 7, 2023 • 438k • 78 • 1

TIA Toolbox models

https://tia-toolbox.readthedocs.io/en/latest/pretrained.html

1aurent/NCT-CRC-HE

Preview • Updated May 25, 2024 • 284 • 3
1aurent/resnet18.tiatoolbox-kather100k

Image Classification • 11.2M • Updated Nov 6, 2023 • 10 • 2
1aurent/resnet34.tiatoolbox-kather100k

Image Classification • 21.3M • Updated Nov 6, 2023 • 5
1aurent/resnet50.tiatoolbox-kather100k

Image Classification • 23.6M • Updated Nov 5, 2023 • 7 • 1

DinoBloom models

A Foundation Model for Generalizable Cell Embeddings in Hematology, https://github.com/marrlab/DinoBloom

DinoBloom: A Foundation Model for Generalizable Cell Embeddings in Hematology

Paper • 2404.05022 • Published Apr 7, 2024 • 3
1aurent/vit_small_patch14_224.dinobloom

Feature Extraction • 21.6M • Updated May 20, 2024 • 660 • 1
1aurent/vit_base_patch14_224.dinobloom

Feature Extraction • 85.7M • Updated May 20, 2024 • 685 • 1
1aurent/vit_large_patch14_224.dinobloom

Feature Extraction • 0.3B • Updated May 20, 2024 • 22

KaikoAI models

Towards Training Large-Scale Pathology Foundation Models: from TCGA to Hospital Scale, https://github.com/kaiko-ai/towards_large_pathology_fms

Towards Large-Scale Training of Pathology Foundation Models

Paper • 2404.15217 • Published Mar 24, 2024
1aurent/vit_small_patch16_224.kaiko_ai_towards_large_pathology_fms

Feature Extraction • 21.7M • Updated Jun 7, 2024 • 314
1aurent/vit_small_patch8_224.kaiko_ai_towards_large_pathology_fms

Feature Extraction • 21.7M • Updated Jun 7, 2024 • 226
1aurent/vit_base_patch16_224.kaiko_ai_towards_large_pathology_fms

Feature Extraction • 85.8M • Updated Jun 7, 2024 • 308 • 2

Transpath models

Transformer-based Unsupervised Contrastive Learning for Histopathological Image Classification, https://github.com/Xiyue-Wang/TransPath

1aurent/vit_small_patch16_224.transpath_mocov3

Feature Extraction • 21.7M • Updated Nov 26, 2023 • 276 • 2
1aurent/swin_tiny_patch4_window7_224.CTransPath

Feature Extraction • 27.8M • Updated Oct 31, 2023 • 291 • 2

Lunit models

Benchmarking Self-Supervised Learning on Diverse Pathology Datasets, https://github.com/lunit-io/benchmark-ssl-patho

Benchmarking Self-Supervised Learning on Diverse Pathology Datasets

Paper • 2212.04690 • Published Dec 9, 2022
1aurent/resnet50.lunit_bt

Image Classification • 23.6M • Updated Nov 26, 2023 • 19
1aurent/resnet50.lunit_swav

Image Classification • 23.6M • Updated Nov 26, 2023 • 6
1aurent/resnet50.lunit_mocov2

Image Classification • 23.6M • Updated Nov 26, 2023 • 7

TCGA-BRCA-SSL models

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology, https://github.com/Richarizardd/Self-Supervised-ViT-Path/

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology

Paper • 2203.00585 • Published Mar 1, 2022 • 2
timm/resnet50.a1_in1k

Image Classification • Updated Jul 11 • 3.55M • 39
1aurent/resnet50.tcga_brca_simclr

Feature Extraction • 23.6M • Updated Oct 31, 2023 • 90 • 1
1aurent/vit_small_patch16_256.tcga_brca_dino

Feature Extraction • 21.7M • Updated Oct 31, 2023 • 32

MedMAE models

Delving into Masked Autoencoders for Multi-Label Thorax Disease Classification, https://github.com/lambert-x/medical_mae

Delving into Masked Autoencoders for Multi-Label Thorax Disease Classification

Paper • 2210.12843 • Published Oct 23, 2022
timm/densenet121.tv_in1k

Image Classification • Updated Jan 21 • 4.97k
1aurent/densenet121.medmae_in1k_ft_CXR

Image Classification • 7.05M • Updated Nov 28, 2023 • 4
1aurent/resnet50.medmae_in1k_mocov2

Image Classification • 23.6M • Updated Nov 28, 2023 • 7

DeblurringMIM models

Deblurring Masked Image Modelling is Better Recipe for Ultrasound Image Analysis, https://github.com/MembrAI/DeblurringMIM

Deblurring Masked Autoencoder is Better Recipe for Ultrasound Image Recognition

Paper • 2306.08249 • Published Jun 14, 2023
1aurent/vit_base_patch16_224.deblurmim_us280k_vanilla_mae

Image Classification • 85.8M • Updated Nov 29, 2023 • 16 • 1
1aurent/vit_base_patch16_224.deblurmim_us280k_deblurring_mae

Image Classification • 85.8M • Updated Nov 29, 2023 • 8

Hibou models

Hibou: A Family of Foundational Vision Transformers for Pathology, https://github.com/HistAI/hibou

Hibou: A Family of Foundational Vision Transformers for Pathology

Paper • 2406.05074 • Published Jun 7, 2024 • 9
histai/hibou-b

Feature Extraction • 85.7M • Updated Aug 20, 2024 • 7.92k • 13
histai/hibou-L

Image Feature Extraction • 0.3B • Updated Aug 20, 2024 • 5.8k • 15

CellViT models

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

Paper • 2306.15350 • Published Jun 27, 2023
histai/cellvit-hibou-l

Updated Aug 21, 2024 • 11

Prov Gigapath models

A whole-slide foundation model for digital pathology from real-world data, https://huggingface.co/prov-gigapath/prov-gigapath

prov-gigapath/prov-gigapath

Image Feature Extraction • Updated Apr 21 • 176k • 150

WILDS

WILDS is a benchmark of in-the-wild distribution shifts spanning diverse data modalities and applications.

WILDS: A Benchmark of in-the-Wild Distribution Shifts

Paper • 2012.07421 • Published Dec 14, 2020 • 1
Extending the WILDS Benchmark for Unsupervised Adaptation

Paper • 2112.05090 • Published Dec 9, 2021 • 1
jxie/camelyon17

Viewer • Updated Jun 22, 2023 • 1.06M • 23 • 1
OGB/ogbg-molpcba

Viewer • Updated Feb 7, 2023 • 438k • 78 • 1